==500963== Memcheck, a memory error detector ==500963== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==500963== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==500963== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==500963== Parent PID: 485460 ==500963== ==500963== ==500963== FILE DESCRIPTORS: 9 open (3 std) at exit. ==500963== Open file descriptor 12: ==500963== at 0xEEEB22D: pipe (pipe.c:29) ==500963== by 0x18A0407D: ??? ==500963== by 0x140074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==500963== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500963== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500963== by 0xF47CD38: PetscInitialize (pinit.c:924) ==500963== by 0xE7F2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==500963== by 0xE7F21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==500963== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==500963== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==500963== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==500963== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==500963== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==500963== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==500963== ==500963== Open file descriptor 8: /dev/shm/open_mpi.0000 ==500963== at 0xEEEFBCC: __open_nocancel (open64_nocancel.c:39) ==500963== by 0xEE73C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==500963== by 0xE826822: ??? ==500963== by 0xE82696F: ??? ==500963== by 0x140AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500963== by 0x140AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500963== by 0x14062922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500963== by 0x140072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==500963== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500963== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500963== by 0xF47CD38: PetscInitialize (pinit.c:924) ==500963== by 0xE7F2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==500963== by 0xE7F21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==500963== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==500963== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==500963== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==500963== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==500963== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==500963== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==500963== ==500963== Open file descriptor 116: ==500963== ==500963== ==500963== Open file descriptor 112: ==500963== ==500963== ==500963== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==500963== ==500963== ==500963== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==500963== ==500963== ==500963== ==500963== HEAP SUMMARY: ==500963== in use at exit: 700,754 bytes in 9,378 blocks ==500963== total heap usage: 2,085,943 allocs, 2,076,565 frees, 1,689,930,791 bytes allocated ==500963== ==500963== LEAK SUMMARY: ==500963== definitely lost: 0 bytes in 0 blocks ==500963== indirectly lost: 0 bytes in 0 blocks ==500963== possibly lost: 0 bytes in 0 blocks ==500963== still reachable: 56 bytes in 3 blocks ==500963== suppressed: 700,698 bytes in 9,375 blocks ==500963== Reachable blocks (those to which a pointer was found) are not shown. ==500963== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==500963== ==500963== For lists of detected and suppressed errors, rerun with: -s ==500963== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)