==557879== Memcheck, a memory error detector ==557879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==557879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==557879== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==557879== Parent PID: 541561 ==557879== ==557879== ==557879== FILE DESCRIPTORS: 9 open (3 std) at exit. ==557879== Open file descriptor 12: ==557879== at 0x1053922D: pipe (pipe.c:29) ==557879== by 0x1A6C807D: ??? ==557879== by 0x158C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557879== by 0x12195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557879== by 0x1212ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557879== by 0x10E25D38: PetscInitialize (pinit.c:924) ==557879== by 0xFD15153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557879== by 0xFD151A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557879== by 0x23B384: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557879== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557879== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557879== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557879== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557879== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==557879== ==557879== Open file descriptor 8: /dev/shm/open_mpi.0000 ==557879== at 0x1053DBCC: __open_nocancel (open64_nocancel.c:39) ==557879== by 0x104C1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==557879== by 0xFD49822: ??? ==557879== by 0xFD4996F: ??? ==557879== by 0x1596D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557879== by 0x1596D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557879== by 0x15923922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557879== by 0x158C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557879== by 0x12195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557879== by 0x1212ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557879== by 0x10E25D38: PetscInitialize (pinit.c:924) ==557879== by 0xFD15153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557879== by 0xFD151A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557879== by 0x23B384: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557879== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557879== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557879== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557879== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557879== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==557879== ==557879== Open file descriptor 116: ==557879== ==557879== ==557879== Open file descriptor 112: ==557879== ==557879== ==557879== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==557879== ==557879== ==557879== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==557879== ==557879== ==557879== ==557879== HEAP SUMMARY: ==557879== in use at exit: 700,702 bytes in 9,374 blocks ==557879== total heap usage: 6,309,655 allocs, 6,300,281 frees, 2,072,713,357 bytes allocated ==557879== ==557879== LEAK SUMMARY: ==557879== definitely lost: 0 bytes in 0 blocks ==557879== indirectly lost: 0 bytes in 0 blocks ==557879== possibly lost: 0 bytes in 0 blocks ==557879== still reachable: 56 bytes in 3 blocks ==557879== suppressed: 700,646 bytes in 9,371 blocks ==557879== Reachable blocks (those to which a pointer was found) are not shown. ==557879== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==557879== ==557879== For lists of detected and suppressed errors, rerun with: -s ==557879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)