==541818== Memcheck, a memory error detector ==541818== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==541818== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==541818== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==541818== Parent PID: 541561 ==541818== ==541818== ==541818== FILE DESCRIPTORS: 9 open (3 std) at exit. ==541818== Open file descriptor 12: ==541818== at 0x645622D: pipe (pipe.c:29) ==541818== by 0xAF1607D: ??? ==541818== by 0x8F364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==541818== by 0x6650418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==541818== by 0x65E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==541818== by 0x4A95D38: PetscInitialize (pinit.c:924) ==541818== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==541818== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==541818== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==541818== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==541818== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==541818== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==541818== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==541818== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==541818== ==541818== Open file descriptor 8: /dev/shm/open_mpi.0000 ==541818== at 0x645ABCC: __open_nocancel (open64_nocancel.c:39) ==541818== by 0x63DEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==541818== by 0x5D1F822: ??? ==541818== by 0x5D1F96F: ??? ==541818== by 0x8FDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==541818== by 0x8FDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==541818== by 0x8F91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==541818== by 0x8F362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==541818== by 0x6650418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==541818== by 0x65E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==541818== by 0x4A95D38: PetscInitialize (pinit.c:924) ==541818== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==541818== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==541818== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==541818== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==541818== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==541818== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==541818== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==541818== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==541818== ==541818== Open file descriptor 116: ==541818== ==541818== ==541818== Open file descriptor 112: ==541818== ==541818== ==541818== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==541818== ==541818== ==541818== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==541818== ==541818== ==541818== ==541818== HEAP SUMMARY: ==541818== in use at exit: 700,754 bytes in 9,387 blocks ==541818== total heap usage: 60,808 allocs, 51,421 frees, 1,363,849,653 bytes allocated ==541818== ==541818== LEAK SUMMARY: ==541818== definitely lost: 0 bytes in 0 blocks ==541818== indirectly lost: 0 bytes in 0 blocks ==541818== possibly lost: 0 bytes in 0 blocks ==541818== still reachable: 24 bytes in 2 blocks ==541818== suppressed: 700,730 bytes in 9,385 blocks ==541818== Reachable blocks (those to which a pointer was found) are not shown. ==541818== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==541818== ==541818== For lists of detected and suppressed errors, rerun with: -s ==541818== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)