==557585== Memcheck, a memory error detector ==557585== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==557585== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==557585== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==557585== Parent PID: 541561 ==557585== ==557585== ==557585== FILE DESCRIPTORS: 9 open (3 std) at exit. ==557585== Open file descriptor 12: ==557585== at 0xD29722D: pipe (pipe.c:29) ==557585== by 0x18A0407D: ??? ==557585== by 0x140164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557585== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557585== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557585== by 0xF47ED38: PetscInitialize (pinit.c:924) ==557585== by 0xCB9C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557585== by 0xCB9C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557585== by 0x123754: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557585== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557585== by 0x12128E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557585== by 0x12112E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557585== by 0x1217C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557585== by 0x11D095: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==557585== ==557585== Open file descriptor 8: /dev/shm/open_mpi.0000 ==557585== at 0xD29BBCC: __open_nocancel (open64_nocancel.c:39) ==557585== by 0xD21FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==557585== by 0xCBD0822: ??? ==557585== by 0xCBD096F: ??? ==557585== by 0x140BB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557585== by 0x140BB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557585== by 0x14071922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557585== by 0x140162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557585== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557585== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557585== by 0xF47ED38: PetscInitialize (pinit.c:924) ==557585== by 0xCB9C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557585== by 0xCB9C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557585== by 0x123754: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557585== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557585== by 0x12128E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557585== by 0x12112E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557585== by 0x1217C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557585== by 0x11D095: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==557585== ==557585== Open file descriptor 116: ==557585== ==557585== ==557585== Open file descriptor 112: ==557585== ==557585== ==557585== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==557585== ==557585== ==557585== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==557585== ==557585== ==557585== ==557585== HEAP SUMMARY: ==557585== in use at exit: 700,686 bytes in 9,374 blocks ==557585== total heap usage: 40,688,632 allocs, 40,679,258 frees, 3,845,546,841 bytes allocated ==557585== ==557585== LEAK SUMMARY: ==557585== definitely lost: 0 bytes in 0 blocks ==557585== indirectly lost: 0 bytes in 0 blocks ==557585== possibly lost: 0 bytes in 0 blocks ==557585== still reachable: 56 bytes in 3 blocks ==557585== suppressed: 700,630 bytes in 9,371 blocks ==557585== Reachable blocks (those to which a pointer was found) are not shown. ==557585== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==557585== ==557585== For lists of detected and suppressed errors, rerun with: -s ==557585== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)