==635375== Memcheck, a memory error detector ==635375== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==635375== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==635375== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==635375== Parent PID: 619305 ==635375== ==635375== ==635375== FILE DESCRIPTORS: 9 open (3 std) at exit. ==635375== Open file descriptor 12: ==635375== at 0x118C522D: pipe (pipe.c:29) ==635375== by 0x1A6C507D: ??? ==635375== by 0x1582B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==635375== by 0x111CD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==635375== by 0x11166D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==635375== by 0xFE3DD38: PetscInitialize (pinit.c:924) ==635375== by 0xFD15153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==635375== by 0xFD151A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==635375== by 0x123E51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==635375== by 0x11F733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==635375== by 0x12199C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==635375== by 0x121898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==635375== by 0x121EAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==635375== by 0x11DF35: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==635375== ==635375== Open file descriptor 8: /dev/shm/open_mpi.0000 ==635375== at 0x118C9BCC: __open_nocancel (open64_nocancel.c:39) ==635375== by 0x1184DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==635375== by 0x110C7822: ??? ==635375== by 0x110C796F: ??? ==635375== by 0x158D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==635375== by 0x158D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==635375== by 0x15886922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==635375== by 0x1582B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==635375== by 0x111CD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==635375== by 0x11166D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==635375== by 0xFE3DD38: PetscInitialize (pinit.c:924) ==635375== by 0xFD15153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==635375== by 0xFD151A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==635375== by 0x123E51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==635375== by 0x11F733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==635375== by 0x12199C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==635375== by 0x121898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==635375== by 0x121EAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==635375== by 0x11DF35: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==635375== ==635375== Open file descriptor 116: ==635375== ==635375== ==635375== Open file descriptor 112: ==635375== ==635375== ==635375== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==635375== ==635375== ==635375== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==635375== ==635375== ==635375== ==635375== HEAP SUMMARY: ==635375== in use at exit: 700,702 bytes in 9,374 blocks ==635375== total heap usage: 16,187,972 allocs, 16,178,598 frees, 2,844,995,560 bytes allocated ==635375== ==635375== LEAK SUMMARY: ==635375== definitely lost: 0 bytes in 0 blocks ==635375== indirectly lost: 0 bytes in 0 blocks ==635375== possibly lost: 0 bytes in 0 blocks ==635375== still reachable: 56 bytes in 3 blocks ==635375== suppressed: 700,646 bytes in 9,371 blocks ==635375== Reachable blocks (those to which a pointer was found) are not shown. ==635375== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==635375== ==635375== For lists of detected and suppressed errors, rerun with: -s ==635375== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)