==886787== Memcheck, a memory error detector ==886787== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==886787== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==886787== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==886787== Parent PID: 868717 ==886787== ==886787== Warning: invalid file descriptor -1 in syscall close() ==886787== ==886787== FILE DESCRIPTORS: 9 open (3 std) at exit. ==886787== Open file descriptor 12: ==886787== at 0xBD5B22D: pipe (pipe.c:29) ==886787== by 0x13F8307D: ??? ==886787== by 0xFC444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==886787== by 0xB649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==886787== by 0xB5E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==886787== by 0x9F24D38: PetscInitialize (pinit.c:924) ==886787== by 0x9D98153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==886787== by 0x9D981A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==886787== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==886787== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==886787== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==886787== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==886787== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==886787== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==886787== ==886787== Open file descriptor 8: /dev/shm/open_mpi.0000 ==886787== at 0xBD5FBCC: __open_nocancel (open64_nocancel.c:39) ==886787== by 0xBCE3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==886787== by 0x9DCC822: ??? ==886787== by 0x9DCC96F: ??? ==886787== by 0xFCE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==886787== by 0xFCE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==886787== by 0xFC9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==886787== by 0xFC442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==886787== by 0xB649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==886787== by 0xB5E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==886787== by 0x9F24D38: PetscInitialize (pinit.c:924) ==886787== by 0x9D98153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==886787== by 0x9D981A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==886787== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==886787== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==886787== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==886787== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==886787== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==886787== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==886787== ==886787== Open file descriptor 116: ==886787== ==886787== ==886787== Open file descriptor 112: ==886787== ==886787== ==886787== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==886787== ==886787== ==886787== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==886787== ==886787== ==886787== ==886787== HEAP SUMMARY: ==886787== in use at exit: 701,150 bytes in 9,383 blocks ==886787== total heap usage: 6,620,316 allocs, 6,610,933 frees, 4,033,882,700 bytes allocated ==886787== ==886787== LEAK SUMMARY: ==886787== definitely lost: 0 bytes in 0 blocks ==886787== indirectly lost: 0 bytes in 0 blocks ==886787== possibly lost: 0 bytes in 0 blocks ==886787== still reachable: 24 bytes in 2 blocks ==886787== suppressed: 701,126 bytes in 9,381 blocks ==886787== Reachable blocks (those to which a pointer was found) are not shown. ==886787== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==886787== ==886787== For lists of detected and suppressed errors, rerun with: -s ==886787== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)