==871015== Memcheck, a memory error detector ==871015== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==871015== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==871015== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==871015== Parent PID: 868717 ==871015== ==871015== ==871015== FILE DESCRIPTORS: 9 open (3 std) at exit. ==871015== Open file descriptor 12: ==871015== at 0x1012E22D: pipe (pipe.c:29) ==871015== by 0x18A0507D: ??? ==871015== by 0x13F684CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==871015== by 0xF94F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==871015== by 0xF8E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==871015== by 0xE5DFD38: PetscInitialize (pinit.c:924) ==871015== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==871015== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==871015== by 0x1FFF0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==871015== by 0x1F9AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==871015== by 0x1FD444: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==871015== by 0x1FD2E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==871015== by 0x1FD97B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==871015== by 0x1F7EF5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==871015== ==871015== Open file descriptor 8: /dev/shm/open_mpi.0000 ==871015== at 0x10132BCC: __open_nocancel (open64_nocancel.c:39) ==871015== by 0x100B6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==871015== by 0xE489822: ??? ==871015== by 0xE48996F: ??? ==871015== by 0x1400F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==871015== by 0x1400F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==871015== by 0x13FC5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==871015== by 0x13F682DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==871015== by 0xF94F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==871015== by 0xF8E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==871015== by 0xE5DFD38: PetscInitialize (pinit.c:924) ==871015== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==871015== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==871015== by 0x1FFF0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==871015== by 0x1F9AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==871015== by 0x1FD444: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==871015== by 0x1FD2E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==871015== by 0x1FD97B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==871015== by 0x1F7EF5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==871015== ==871015== Open file descriptor 116: ==871015== ==871015== ==871015== Open file descriptor 112: ==871015== ==871015== ==871015== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==871015== ==871015== ==871015== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==871015== ==871015== ==871015== ==871015== HEAP SUMMARY: ==871015== in use at exit: 700,686 bytes in 9,374 blocks ==871015== total heap usage: 9,749,297 allocs, 9,739,923 frees, 2,617,598,472 bytes allocated ==871015== ==871015== LEAK SUMMARY: ==871015== definitely lost: 0 bytes in 0 blocks ==871015== indirectly lost: 0 bytes in 0 blocks ==871015== possibly lost: 0 bytes in 0 blocks ==871015== still reachable: 56 bytes in 3 blocks ==871015== suppressed: 700,630 bytes in 9,371 blocks ==871015== Reachable blocks (those to which a pointer was found) are not shown. ==871015== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==871015== ==871015== For lists of detected and suppressed errors, rerun with: -s ==871015== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)