==870259== Memcheck, a memory error detector ==870259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==870259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==870259== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==870259== Parent PID: 868717 ==870259== ==870259== ==870259== FILE DESCRIPTORS: 9 open (3 std) at exit. ==870259== Open file descriptor 12: ==870259== at 0xD24A22D: pipe (pipe.c:29) ==870259== by 0x18A0407D: ??? ==870259== by 0x13FC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==870259== by 0x104A7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==870259== by 0x10440D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==870259== by 0xF137D38: PetscInitialize (pinit.c:924) ==870259== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==870259== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==870259== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==870259== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==870259== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==870259== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==870259== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==870259== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==870259== ==870259== Open file descriptor 8: /dev/shm/open_mpi.0000 ==870259== at 0xD24EBCC: __open_nocancel (open64_nocancel.c:39) ==870259== by 0xD1D2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==870259== by 0xCE88822: ??? ==870259== by 0xCE8896F: ??? ==870259== by 0x1406E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==870259== by 0x1406E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==870259== by 0x14024922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==870259== by 0x13FC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==870259== by 0x104A7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==870259== by 0x10440D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==870259== by 0xF137D38: PetscInitialize (pinit.c:924) ==870259== by 0xCE54153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==870259== by 0xCE541A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==870259== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==870259== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==870259== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==870259== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==870259== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==870259== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==870259== ==870259== Open file descriptor 116: ==870259== ==870259== ==870259== Open file descriptor 112: ==870259== ==870259== ==870259== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==870259== ==870259== ==870259== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==870259== ==870259== ==870259== ==870259== HEAP SUMMARY: ==870259== in use at exit: 700,722 bytes in 9,377 blocks ==870259== total heap usage: 60,159 allocs, 50,782 frees, 1,354,339,651 bytes allocated ==870259== ==870259== LEAK SUMMARY: ==870259== definitely lost: 0 bytes in 0 blocks ==870259== indirectly lost: 0 bytes in 0 blocks ==870259== possibly lost: 0 bytes in 0 blocks ==870259== still reachable: 24 bytes in 2 blocks ==870259== suppressed: 700,698 bytes in 9,375 blocks ==870259== Reachable blocks (those to which a pointer was found) are not shown. ==870259== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==870259== ==870259== For lists of detected and suppressed errors, rerun with: -s ==870259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)