==946458== Memcheck, a memory error detector ==946458== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==946458== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==946458== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==946458== Parent PID: 944923 ==946458== ==946458== ==946458== FILE DESCRIPTORS: 9 open (3 std) at exit. ==946458== Open file descriptor 12: ==946458== at 0xE68E22D: pipe (pipe.c:29) ==946458== by 0x18A0407D: ??? ==946458== by 0x12FA64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==946458== by 0xE2DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==946458== by 0xE274D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==946458== by 0xCF6BD38: PetscInitialize (pinit.c:924) ==946458== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==946458== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==946458== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==946458== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==946458== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==946458== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==946458== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==946458== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==946458== ==946458== Open file descriptor 8: /dev/shm/open_mpi.0000 ==946458== at 0xE692BCC: __open_nocancel (open64_nocancel.c:39) ==946458== by 0xE616C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==946458== by 0xCE15822: ??? ==946458== by 0xCE1596F: ??? ==946458== by 0x1304B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==946458== by 0x1304B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==946458== by 0x13001922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==946458== by 0x12FA62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==946458== by 0xE2DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==946458== by 0xE274D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==946458== by 0xCF6BD38: PetscInitialize (pinit.c:924) ==946458== by 0xCDE1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==946458== by 0xCDE11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==946458== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==946458== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==946458== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==946458== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==946458== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==946458== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==946458== ==946458== Open file descriptor 116: ==946458== ==946458== ==946458== Open file descriptor 112: ==946458== ==946458== ==946458== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==946458== ==946458== ==946458== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==946458== ==946458== ==946458== ==946458== HEAP SUMMARY: ==946458== in use at exit: 700,722 bytes in 9,377 blocks ==946458== total heap usage: 167,848 allocs, 158,471 frees, 1,364,668,373 bytes allocated ==946458== ==946458== LEAK SUMMARY: ==946458== definitely lost: 0 bytes in 0 blocks ==946458== indirectly lost: 0 bytes in 0 blocks ==946458== possibly lost: 0 bytes in 0 blocks ==946458== still reachable: 24 bytes in 2 blocks ==946458== suppressed: 700,698 bytes in 9,375 blocks ==946458== Reachable blocks (those to which a pointer was found) are not shown. ==946458== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==946458== ==946458== For lists of detected and suppressed errors, rerun with: -s ==946458== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)