==1004937== Memcheck, a memory error detector ==1004937== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1004937== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1004937== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info ==1004937== Parent PID: 1002846 ==1004937== ==1004937== ==1004937== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1004937== Open file descriptor 12: ==1004937== at 0x10D7922D: pipe (pipe.c:29) ==1004937== by 0x1977807D: ??? ==1004937== by 0x14CF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1004937== by 0x10681418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004937== by 0x1061AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004937== by 0xF2F1D38: PetscInitialize (pinit.c:924) ==1004937== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1004937== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1004937== by 0x13860D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1004937== by 0x13148D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1004937== by 0x134384: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1004937== by 0x134224: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004937== by 0x1348BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004937== by 0x12F8B5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==1004937== ==1004937== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1004937== at 0x10D7DBCC: __open_nocancel (open64_nocancel.c:39) ==1004937== by 0x10D01C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1004937== by 0x1057B822: ??? ==1004937== by 0x1057B96F: ??? ==1004937== by 0x14D986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004937== by 0x14D98938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004937== by 0x14D4E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004937== by 0x14CF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1004937== by 0x10681418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004937== by 0x1061AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004937== by 0xF2F1D38: PetscInitialize (pinit.c:924) ==1004937== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1004937== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1004937== by 0x13860D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1004937== by 0x13148D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1004937== by 0x134384: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1004937== by 0x134224: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004937== by 0x1348BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004937== by 0x12F8B5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==1004937== ==1004937== Open file descriptor 116: ==1004937== ==1004937== ==1004937== Open file descriptor 112: ==1004937== ==1004937== ==1004937== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt ==1004937== ==1004937== ==1004937== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1004937== ==1004937== ==1004937== ==1004937== HEAP SUMMARY: ==1004937== in use at exit: 700,855 bytes in 9,380 blocks ==1004937== total heap usage: 1,440,087 allocs, 1,430,707 frees, 1,470,598,147 bytes allocated ==1004937== ==1004937== 48 bytes in 1 blocks are definitely lost in loss record 27 of 68 ==1004937== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1004937== by 0xE7B3A3F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:132) ==1004937== by 0x1406EB: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:310) ==1004937== by 0x149832: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==1004937== by 0x130B71: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1004937== by 0x134632: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1004937== by 0x134517: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1004937== by 0x1343BD: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1004937== by 0x134224: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004937== by 0x1348BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004937== by 0x12F8B5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==1004937== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1004937== 48 bytes in 1 blocks are definitely lost in loss record 28 of 68 ==1004937== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1004937== by 0xE7B3BB9: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:152) ==1004937== by 0x1406EB: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:310) ==1004937== by 0x149832: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==1004937== by 0x130B71: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1004937== by 0x134632: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1004937== by 0x134517: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1004937== by 0x1343BD: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1004937== by 0x134224: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004937== by 0x1348BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004937== by 0x12F8B5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==1004937== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1004937== LEAK SUMMARY: ==1004937== definitely lost: 96 bytes in 2 blocks ==1004937== indirectly lost: 0 bytes in 0 blocks ==1004937== possibly lost: 0 bytes in 0 blocks ==1004937== still reachable: 56 bytes in 3 blocks ==1004937== suppressed: 700,703 bytes in 9,375 blocks ==1004937== Reachable blocks (those to which a pointer was found) are not shown. ==1004937== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1004937== ==1004937== For lists of detected and suppressed errors, rerun with: -s ==1004937== ERROR SUMMARY: 2 errors from 2 contexts (suppressed: 37 from 37)