==1021071== Memcheck, a memory error detector ==1021071== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1021071== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1021071== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1021071== Parent PID: 1002846 ==1021071== ==1021071== Warning: invalid file descriptor -1 in syscall close() ==1021071== ==1021071== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1021071== Open file descriptor 12: ==1021071== at 0xC0E822D: pipe (pipe.c:29) ==1021071== by 0x1431107D: ??? ==1021071== by 0xFFD24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1021071== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021071== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021071== by 0xA2B1D38: PetscInitialize (pinit.c:924) ==1021071== by 0xA1242DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1021071== by 0xA12432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1021071== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1021071== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1021071== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1021071== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1021071== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1021071== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1021071== ==1021071== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1021071== at 0xC0ECBCC: __open_nocancel (open64_nocancel.c:39) ==1021071== by 0xC070C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1021071== by 0xA159822: ??? ==1021071== by 0xA15996F: ??? ==1021071== by 0x100776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021071== by 0x10077938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021071== by 0x1002D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021071== by 0xFFD22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1021071== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021071== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021071== by 0xA2B1D38: PetscInitialize (pinit.c:924) ==1021071== by 0xA1242DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1021071== by 0xA12432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1021071== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1021071== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1021071== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1021071== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1021071== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1021071== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1021071== ==1021071== Open file descriptor 116: ==1021071== ==1021071== ==1021071== Open file descriptor 112: ==1021071== ==1021071== ==1021071== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1021071== ==1021071== ==1021071== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1021071== ==1021071== ==1021071== ==1021071== HEAP SUMMARY: ==1021071== in use at exit: 701,152 bytes in 9,383 blocks ==1021071== total heap usage: 6,620,472 allocs, 6,611,089 frees, 4,033,897,539 bytes allocated ==1021071== ==1021071== LEAK SUMMARY: ==1021071== definitely lost: 0 bytes in 0 blocks ==1021071== indirectly lost: 0 bytes in 0 blocks ==1021071== possibly lost: 0 bytes in 0 blocks ==1021071== still reachable: 24 bytes in 2 blocks ==1021071== suppressed: 701,128 bytes in 9,381 blocks ==1021071== Reachable blocks (those to which a pointer was found) are not shown. ==1021071== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1021071== ==1021071== For lists of detected and suppressed errors, rerun with: -s ==1021071== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)