==1005674== Memcheck, a memory error detector ==1005674== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1005674== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1005674== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1005674== Parent PID: 1002846 ==1005674== ==1005674== ==1005674== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1005674== Open file descriptor 12: ==1005674== at 0xFE6922D: pipe (pipe.c:29) ==1005674== by 0x1977807D: ??? ==1005674== by 0x14E9F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1005674== by 0x11AC5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1005674== by 0x11A5ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1005674== by 0x10755D38: PetscInitialize (pinit.c:924) ==1005674== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1005674== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1005674== by 0x1D3482: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1005674== by 0x1CCE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1005674== by 0x1D05B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1005674== by 0x1D0454: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1005674== by 0x1D0AEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1005674== by 0x1CB235: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1005674== ==1005674== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1005674== at 0xFE6DBCC: __open_nocancel (open64_nocancel.c:39) ==1005674== by 0xFDF1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1005674== by 0xF1FD822: ??? ==1005674== by 0xF1FD96F: ??? ==1005674== by 0x14F446DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1005674== by 0x14F44938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1005674== by 0x14EFA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1005674== by 0x14E9F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1005674== by 0x11AC5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1005674== by 0x11A5ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1005674== by 0x10755D38: PetscInitialize (pinit.c:924) ==1005674== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1005674== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1005674== by 0x1D3482: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1005674== by 0x1CCE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1005674== by 0x1D05B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1005674== by 0x1D0454: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1005674== by 0x1D0AEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1005674== by 0x1CB235: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1005674== ==1005674== Open file descriptor 116: ==1005674== ==1005674== ==1005674== Open file descriptor 112: ==1005674== ==1005674== ==1005674== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==1005674== ==1005674== ==1005674== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1005674== ==1005674== ==1005674== ==1005674== HEAP SUMMARY: ==1005674== in use at exit: 700,688 bytes in 9,374 blocks ==1005674== total heap usage: 7,097,933 allocs, 7,088,559 frees, 8,099,053,429 bytes allocated ==1005674== ==1005674== LEAK SUMMARY: ==1005674== definitely lost: 0 bytes in 0 blocks ==1005674== indirectly lost: 0 bytes in 0 blocks ==1005674== possibly lost: 0 bytes in 0 blocks ==1005674== still reachable: 56 bytes in 3 blocks ==1005674== suppressed: 700,632 bytes in 9,371 blocks ==1005674== Reachable blocks (those to which a pointer was found) are not shown. ==1005674== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1005674== ==1005674== For lists of detected and suppressed errors, rerun with: -s ==1005674== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)