==1007059== Memcheck, a memory error detector ==1007059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1007059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1007059== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1007059== Parent PID: 1002846 ==1007059== ==1007059== ==1007059== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1007059== Open file descriptor 12: ==1007059== at 0xFD4822D: pipe (pipe.c:29) ==1007059== by 0x1977907D: ??? ==1007059== by 0x14D7C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1007059== by 0x11649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1007059== by 0x115E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1007059== by 0x102D9D38: PetscInitialize (pinit.c:924) ==1007059== by 0xF5652DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1007059== by 0xF56532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1007059== by 0x135852: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1007059== by 0x1303E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1007059== by 0x133068: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1007059== by 0x132F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1007059== by 0x13359F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1007059== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1007059== ==1007059== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1007059== at 0xFD4CBCC: __open_nocancel (open64_nocancel.c:39) ==1007059== by 0xFCD0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1007059== by 0xF59A822: ??? ==1007059== by 0xF59A96F: ??? ==1007059== by 0x14E216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1007059== by 0x14E21938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1007059== by 0x14DD7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1007059== by 0x14D7C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1007059== by 0x11649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1007059== by 0x115E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1007059== by 0x102D9D38: PetscInitialize (pinit.c:924) ==1007059== by 0xF5652DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1007059== by 0xF56532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1007059== by 0x135852: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1007059== by 0x1303E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1007059== by 0x133068: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1007059== by 0x132F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1007059== by 0x13359F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1007059== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1007059== ==1007059== Open file descriptor 116: ==1007059== ==1007059== ==1007059== Open file descriptor 112: ==1007059== ==1007059== ==1007059== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==1007059== ==1007059== ==1007059== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1007059== ==1007059== ==1007059== ==1007059== HEAP SUMMARY: ==1007059== in use at exit: 700,759 bytes in 9,378 blocks ==1007059== total heap usage: 2,359,120 allocs, 2,349,742 frees, 1,791,569,550 bytes allocated ==1007059== ==1007059== LEAK SUMMARY: ==1007059== definitely lost: 0 bytes in 0 blocks ==1007059== indirectly lost: 0 bytes in 0 blocks ==1007059== possibly lost: 0 bytes in 0 blocks ==1007059== still reachable: 56 bytes in 3 blocks ==1007059== suppressed: 700,703 bytes in 9,375 blocks ==1007059== Reachable blocks (those to which a pointer was found) are not shown. ==1007059== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1007059== ==1007059== For lists of detected and suppressed errors, rerun with: -s ==1007059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)