==1226553== Memcheck, a memory error detector ==1226553== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1226553== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1226553== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1226553== Parent PID: 1208515 ==1226553== ==1226553== Warning: invalid file descriptor -1 in syscall close() ==1226553== ==1226553== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1226553== Open file descriptor 12: ==1226553== at 0xBD6D22D: pipe (pipe.c:29) ==1226553== by 0x13F9607D: ??? ==1226553== by 0xFC574CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1226553== by 0xB65B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1226553== by 0xB5F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1226553== by 0x9F36D38: PetscInitialize (pinit.c:924) ==1226553== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1226553== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1226553== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1226553== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1226553== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1226553== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1226553== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1226553== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1226553== ==1226553== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1226553== at 0xBD71BCC: __open_nocancel (open64_nocancel.c:39) ==1226553== by 0xBCF5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1226553== by 0x9DDE822: ??? ==1226553== by 0x9DDE96F: ??? ==1226553== by 0xFCFC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1226553== by 0xFCFC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1226553== by 0xFCB2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1226553== by 0xFC572DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1226553== by 0xB65B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1226553== by 0xB5F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1226553== by 0x9F36D38: PetscInitialize (pinit.c:924) ==1226553== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1226553== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1226553== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1226553== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1226553== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1226553== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1226553== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1226553== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1226553== ==1226553== Open file descriptor 116: ==1226553== ==1226553== ==1226553== Open file descriptor 112: ==1226553== ==1226553== ==1226553== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1226553== ==1226553== ==1226553== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1226553== ==1226553== ==1226553== ==1226553== HEAP SUMMARY: ==1226553== in use at exit: 701,152 bytes in 9,383 blocks ==1226553== total heap usage: 6,620,314 allocs, 6,610,931 frees, 4,033,882,634 bytes allocated ==1226553== ==1226553== LEAK SUMMARY: ==1226553== definitely lost: 0 bytes in 0 blocks ==1226553== indirectly lost: 0 bytes in 0 blocks ==1226553== possibly lost: 0 bytes in 0 blocks ==1226553== still reachable: 24 bytes in 2 blocks ==1226553== suppressed: 701,128 bytes in 9,381 blocks ==1226553== Reachable blocks (those to which a pointer was found) are not shown. ==1226553== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1226553== ==1226553== For lists of detected and suppressed errors, rerun with: -s ==1226553== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)