==50916== Memcheck, a memory error detector ==50916== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==50916== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==50916== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==50916== Parent PID: 49310 ==50916== ==50916== ==50916== FILE DESCRIPTORS: 9 open (3 std) at exit. ==50916== Open file descriptor 12: ==50916== at 0xF07622D: pipe (pipe.c:29) ==50916== by 0x1977907D: ??? ==50916== by 0x13D1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==50916== by 0xECC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50916== by 0xEC5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50916== by 0xD953D38: PetscInitialize (pinit.c:924) ==50916== by 0xD7C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==50916== by 0xD7C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==50916== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==50916== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==50916== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==50916== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==50916== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==50916== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==50916== ==50916== Open file descriptor 8: /dev/shm/open_mpi.0000 ==50916== at 0xF07ABCC: __open_nocancel (open64_nocancel.c:39) ==50916== by 0xEFFEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==50916== by 0xD7FD822: ??? ==50916== by 0xD7FD96F: ??? ==50916== by 0x13DBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50916== by 0x13DBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50916== by 0x13D75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50916== by 0x13D1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==50916== by 0xECC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50916== by 0xEC5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50916== by 0xD953D38: PetscInitialize (pinit.c:924) ==50916== by 0xD7C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==50916== by 0xD7C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==50916== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==50916== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==50916== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==50916== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==50916== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==50916== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==50916== ==50916== Open file descriptor 115: ==50916== ==50916== ==50916== Open file descriptor 112: ==50916== ==50916== ==50916== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==50916== ==50916== ==50916== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==50916== ==50916== ==50916== ==50916== HEAP SUMMARY: ==50916== in use at exit: 700,717 bytes in 9,377 blocks ==50916== total heap usage: 168,427 allocs, 159,050 frees, 1,364,720,112 bytes allocated ==50916== ==50916== LEAK SUMMARY: ==50916== definitely lost: 0 bytes in 0 blocks ==50916== indirectly lost: 0 bytes in 0 blocks ==50916== possibly lost: 0 bytes in 0 blocks ==50916== still reachable: 24 bytes in 2 blocks ==50916== suppressed: 700,693 bytes in 9,375 blocks ==50916== Reachable blocks (those to which a pointer was found) are not shown. ==50916== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==50916== ==50916== For lists of detected and suppressed errors, rerun with: -s ==50916== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)