==51647== Memcheck, a memory error detector ==51647== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==51647== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==51647== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==51647== Parent PID: 49310 ==51647== ==51647== ==51647== FILE DESCRIPTORS: 9 open (3 std) at exit. ==51647== Open file descriptor 12: ==51647== at 0xF9A922D: pipe (pipe.c:29) ==51647== by 0x1977907D: ??? ==51647== by 0x14D854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==51647== by 0x11649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51647== by 0x115E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51647== by 0x102D9D38: PetscInitialize (pinit.c:924) ==51647== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==51647== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==51647== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==51647== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==51647== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==51647== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==51647== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==51647== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==51647== ==51647== Open file descriptor 8: /dev/shm/open_mpi.0000 ==51647== at 0xF9ADBCC: __open_nocancel (open64_nocancel.c:39) ==51647== by 0xF931C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==51647== by 0xF1FD822: ??? ==51647== by 0xF1FD96F: ??? ==51647== by 0x14E2A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51647== by 0x14E2A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51647== by 0x14DE0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51647== by 0x14D852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==51647== by 0x11649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51647== by 0x115E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51647== by 0x102D9D38: PetscInitialize (pinit.c:924) ==51647== by 0xF1C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==51647== by 0xF1C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==51647== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==51647== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==51647== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==51647== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==51647== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==51647== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==51647== ==51647== Open file descriptor 115: ==51647== ==51647== ==51647== Open file descriptor 112: ==51647== ==51647== ==51647== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==51647== ==51647== ==51647== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==51647== ==51647== ==51647== ==51647== HEAP SUMMARY: ==51647== in use at exit: 700,684 bytes in 9,374 blocks ==51647== total heap usage: 6,678,700 allocs, 6,669,326 frees, 9,011,203,925 bytes allocated ==51647== ==51647== LEAK SUMMARY: ==51647== definitely lost: 0 bytes in 0 blocks ==51647== indirectly lost: 0 bytes in 0 blocks ==51647== possibly lost: 0 bytes in 0 blocks ==51647== still reachable: 56 bytes in 3 blocks ==51647== suppressed: 700,628 bytes in 9,371 blocks ==51647== Reachable blocks (those to which a pointer was found) are not shown. ==51647== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==51647== ==51647== For lists of detected and suppressed errors, rerun with: -s ==51647== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)