==149400== Memcheck, a memory error detector ==149400== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==149400== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==149400== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==149400== Parent PID: 147781 ==149400== ==149400== ==149400== FILE DESCRIPTORS: 9 open (3 std) at exit. ==149400== Open file descriptor 12: ==149400== at 0xF07622D: pipe (pipe.c:29) ==149400== by 0x1977707D: ??? ==149400== by 0x13D184CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==149400== by 0xECC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149400== by 0xEC5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149400== by 0xD953D38: PetscInitialize (pinit.c:924) ==149400== by 0xD7C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==149400== by 0xD7C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==149400== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==149400== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==149400== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==149400== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==149400== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==149400== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==149400== ==149400== Open file descriptor 8: /dev/shm/open_mpi.0000 ==149400== at 0xF07ABCC: __open_nocancel (open64_nocancel.c:39) ==149400== by 0xEFFEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==149400== by 0xD7FD822: ??? ==149400== by 0xD7FD96F: ??? ==149400== by 0x13DBD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149400== by 0x13DBD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149400== by 0x13D73922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149400== by 0x13D182DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==149400== by 0xECC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149400== by 0xEC5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149400== by 0xD953D38: PetscInitialize (pinit.c:924) ==149400== by 0xD7C82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==149400== by 0xD7C832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==149400== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==149400== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==149400== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==149400== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==149400== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==149400== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==149400== ==149400== Open file descriptor 115: ==149400== ==149400== ==149400== Open file descriptor 112: ==149400== ==149400== ==149400== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==149400== ==149400== ==149400== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==149400== ==149400== ==149400== ==149400== HEAP SUMMARY: ==149400== in use at exit: 700,722 bytes in 9,377 blocks ==149400== total heap usage: 168,427 allocs, 159,050 frees, 1,364,719,383 bytes allocated ==149400== ==149400== LEAK SUMMARY: ==149400== definitely lost: 0 bytes in 0 blocks ==149400== indirectly lost: 0 bytes in 0 blocks ==149400== possibly lost: 0 bytes in 0 blocks ==149400== still reachable: 24 bytes in 2 blocks ==149400== suppressed: 700,698 bytes in 9,375 blocks ==149400== Reachable blocks (those to which a pointer was found) are not shown. ==149400== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==149400== ==149400== For lists of detected and suppressed errors, rerun with: -s ==149400== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)