==150165== Memcheck, a memory error detector ==150165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==150165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==150165== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==150165== Parent PID: 147781 ==150165== ==150165== ==150165== FILE DESCRIPTORS: 9 open (3 std) at exit. ==150165== Open file descriptor 12: ==150165== at 0xF9A722D: pipe (pipe.c:29) ==150165== by 0x1977707D: ??? ==150165== by 0x14D854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==150165== by 0x11647418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==150165== by 0x115E0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==150165== by 0x102D7D38: PetscInitialize (pinit.c:924) ==150165== by 0xF1C62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==150165== by 0xF1C632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==150165== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==150165== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==150165== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==150165== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==150165== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==150165== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==150165== ==150165== Open file descriptor 8: /dev/shm/open_mpi.0000 ==150165== at 0xF9ABBCC: __open_nocancel (open64_nocancel.c:39) ==150165== by 0xF92FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==150165== by 0xF1FB822: ??? ==150165== by 0xF1FB96F: ??? ==150165== by 0x14E2A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==150165== by 0x14E2A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==150165== by 0x14DE0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==150165== by 0x14D852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==150165== by 0x11647418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==150165== by 0x115E0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==150165== by 0x102D7D38: PetscInitialize (pinit.c:924) ==150165== by 0xF1C62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==150165== by 0xF1C632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==150165== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==150165== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==150165== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==150165== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==150165== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==150165== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==150165== ==150165== Open file descriptor 115: ==150165== ==150165== ==150165== Open file descriptor 112: ==150165== ==150165== ==150165== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==150165== ==150165== ==150165== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==150165== ==150165== ==150165== ==150165== HEAP SUMMARY: ==150165== in use at exit: 700,686 bytes in 9,374 blocks ==150165== total heap usage: 6,676,752 allocs, 6,667,378 frees, 9,010,793,124 bytes allocated ==150165== ==150165== LEAK SUMMARY: ==150165== definitely lost: 0 bytes in 0 blocks ==150165== indirectly lost: 0 bytes in 0 blocks ==150165== possibly lost: 0 bytes in 0 blocks ==150165== still reachable: 56 bytes in 3 blocks ==150165== suppressed: 700,630 bytes in 9,371 blocks ==150165== Reachable blocks (those to which a pointer was found) are not shown. ==150165== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==150165== ==150165== For lists of detected and suppressed errors, rerun with: -s ==150165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)