==149416== Memcheck, a memory error detector ==149416== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==149416== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==149416== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==149416== Parent PID: 147781 ==149416== ==149416== ==149416== FILE DESCRIPTORS: 9 open (3 std) at exit. ==149416== Open file descriptor 12: ==149416== at 0xDC3222D: pipe (pipe.c:29) ==149416== by 0x1977707D: ??? ==149416== by 0x14D344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==149416== by 0x11219418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149416== by 0x111B2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149416== by 0xFEA9D38: PetscInitialize (pinit.c:924) ==149416== by 0xD83B2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==149416== by 0xD83B32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==149416== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==149416== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==149416== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==149416== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==149416== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==149416== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==149416== ==149416== Open file descriptor 8: /dev/shm/open_mpi.0000 ==149416== at 0xDC36BCC: __open_nocancel (open64_nocancel.c:39) ==149416== by 0xDBBAC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==149416== by 0xD870822: ??? ==149416== by 0xD87096F: ??? ==149416== by 0x14DD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149416== by 0x14DD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149416== by 0x14D8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==149416== by 0x14D342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==149416== by 0x11219418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149416== by 0x111B2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==149416== by 0xFEA9D38: PetscInitialize (pinit.c:924) ==149416== by 0xD83B2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==149416== by 0xD83B32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==149416== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==149416== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==149416== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==149416== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==149416== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==149416== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==149416== ==149416== Open file descriptor 115: ==149416== ==149416== ==149416== Open file descriptor 112: ==149416== ==149416== ==149416== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==149416== ==149416== ==149416== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==149416== ==149416== ==149416== ==149416== HEAP SUMMARY: ==149416== in use at exit: 700,722 bytes in 9,377 blocks ==149416== total heap usage: 60,739 allocs, 51,362 frees, 1,354,391,377 bytes allocated ==149416== ==149416== LEAK SUMMARY: ==149416== definitely lost: 0 bytes in 0 blocks ==149416== indirectly lost: 0 bytes in 0 blocks ==149416== possibly lost: 0 bytes in 0 blocks ==149416== still reachable: 24 bytes in 2 blocks ==149416== suppressed: 700,698 bytes in 9,375 blocks ==149416== Reachable blocks (those to which a pointer was found) are not shown. ==149416== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==149416== ==149416== For lists of detected and suppressed errors, rerun with: -s ==149416== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)