==231930== Memcheck, a memory error detector ==231930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==231930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==231930== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info ==231930== Parent PID: 229766 ==231930== ==231930== ==231930== FILE DESCRIPTORS: 9 open (3 std) at exit. ==231930== Open file descriptor 12: ==231930== at 0x10DBA22D: pipe (pipe.c:29) ==231930== by 0x1977807D: ??? ==231930== by 0x14CF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==231930== by 0x106C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==231930== by 0x1065BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==231930== by 0xF352D38: PetscInitialize (pinit.c:924) ==231930== by 0xF1C72DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==231930== by 0xF1C732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==231930== by 0x150109: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==231930== by 0x1489AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==231930== by 0x14BA82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== ==231930== Open file descriptor 8: /dev/shm/open_mpi.0000 ==231930== at 0x10DBEBCC: __open_nocancel (open64_nocancel.c:39) ==231930== by 0x10D42C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==231930== by 0xF1FC822: ??? ==231930== by 0xF1FC96F: ??? ==231930== by 0x14D986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==231930== by 0x14D98938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==231930== by 0x14D4E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==231930== by 0x14CF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==231930== by 0x106C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==231930== by 0x1065BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==231930== by 0xF352D38: PetscInitialize (pinit.c:924) ==231930== by 0xF1C72DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==231930== by 0xF1C732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==231930== by 0x150109: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==231930== by 0x1489AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==231930== by 0x14BA82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== ==231930== Open file descriptor 115: ==231930== ==231930== ==231930== Open file descriptor 112: ==231930== ==231930== ==231930== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt ==231930== ==231930== ==231930== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==231930== ==231930== ==231930== ==231930== HEAP SUMMARY: ==231930== in use at exit: 700,946 bytes in 9,382 blocks ==231930== total heap usage: 2,138,262 allocs, 2,128,880 frees, 1,516,962,428 bytes allocated ==231930== ==231930== 48 bytes in 1 blocks are definitely lost in loss record 27 of 70 ==231930== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==231930== by 0xE7B3A87: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==231930== by 0x1581F1: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:312) ==231930== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==231930== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==231930== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==231930== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==231930== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==231930== 48 bytes in 1 blocks are definitely lost in loss record 28 of 70 ==231930== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==231930== by 0xE7B3C01: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==231930== by 0x1581F1: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:312) ==231930== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==231930== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==231930== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==231930== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==231930== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==231930== 48 bytes in 1 blocks are definitely lost in loss record 29 of 70 ==231930== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==231930== by 0xE7B3A87: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==231930== by 0x15945F: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:381) ==231930== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==231930== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==231930== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==231930== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==231930== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==231930== 48 bytes in 1 blocks are definitely lost in loss record 30 of 70 ==231930== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==231930== by 0xE7B3C01: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==231930== by 0x15945F: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:381) ==231930== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==231930== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==231930== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==231930== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==231930== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==231930== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==231930== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==231930== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==231930== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==231930== LEAK SUMMARY: ==231930== definitely lost: 192 bytes in 4 blocks ==231930== indirectly lost: 0 bytes in 0 blocks ==231930== possibly lost: 0 bytes in 0 blocks ==231930== still reachable: 56 bytes in 3 blocks ==231930== suppressed: 700,698 bytes in 9,375 blocks ==231930== Reachable blocks (those to which a pointer was found) are not shown. ==231930== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==231930== ==231930== For lists of detected and suppressed errors, rerun with: -s ==231930== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 37 from 37)