==293019== Memcheck, a memory error detector ==293019== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==293019== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==293019== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==293019== Parent PID: 291395 ==293019== ==293019== ==293019== FILE DESCRIPTORS: 9 open (3 std) at exit. ==293019== Open file descriptor 12: ==293019== at 0xEF8C22D: pipe (pipe.c:29) ==293019== by 0x1968D07D: ??? ==293019== by 0x13C2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293019== by 0xEBD9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293019== by 0xEB72D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293019== by 0xD869D38: PetscInitialize (pinit.c:924) ==293019== by 0xD6DE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293019== by 0xD6DE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293019== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==293019== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293019== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293019== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293019== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293019== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==293019== ==293019== Open file descriptor 8: /dev/shm/open_mpi.0000 ==293019== at 0xEF90BCC: __open_nocancel (open64_nocancel.c:39) ==293019== by 0xEF14C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==293019== by 0xD713822: ??? ==293019== by 0xD71396F: ??? ==293019== by 0x13CD46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293019== by 0x13CD4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293019== by 0x13C8A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293019== by 0x13C2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293019== by 0xEBD9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293019== by 0xEB72D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293019== by 0xD869D38: PetscInitialize (pinit.c:924) ==293019== by 0xD6DE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293019== by 0xD6DE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293019== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==293019== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293019== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293019== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293019== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293019== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==293019== ==293019== Open file descriptor 115: ==293019== ==293019== ==293019== Open file descriptor 112: ==293019== ==293019== ==293019== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==293019== ==293019== ==293019== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==293019== ==293019== ==293019== ==293019== HEAP SUMMARY: ==293019== in use at exit: 700,722 bytes in 9,377 blocks ==293019== total heap usage: 168,371 allocs, 158,994 frees, 1,364,715,225 bytes allocated ==293019== ==293019== LEAK SUMMARY: ==293019== definitely lost: 0 bytes in 0 blocks ==293019== indirectly lost: 0 bytes in 0 blocks ==293019== possibly lost: 0 bytes in 0 blocks ==293019== still reachable: 24 bytes in 2 blocks ==293019== suppressed: 700,698 bytes in 9,375 blocks ==293019== Reachable blocks (those to which a pointer was found) are not shown. ==293019== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==293019== ==293019== For lists of detected and suppressed errors, rerun with: -s ==293019== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)