==291652== Memcheck, a memory error detector ==291652== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==291652== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==291652== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==291652== Parent PID: 291395 ==291652== ==291652== Warning: invalid file descriptor -1 in syscall close() ==291652== ==291652== FILE DESCRIPTORS: 9 open (3 std) at exit. ==291652== Open file descriptor 12: ==291652== at 0x658E22D: pipe (pipe.c:29) ==291652== by 0xAF1707D: ??? ==291652== by 0x8F374CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==291652== by 0x61DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==291652== by 0x6176D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==291652== by 0x4A96D38: PetscInitialize (pinit.c:924) ==291652== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==291652== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==291652== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==291652== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==291652== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==291652== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==291652== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==291652== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==291652== ==291652== Open file descriptor 8: /dev/shm/open_mpi.0000 ==291652== at 0x6592BCC: __open_nocancel (open64_nocancel.c:39) ==291652== by 0x6516C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==291652== by 0x5D20822: ??? ==291652== by 0x5D2096F: ??? ==291652== by 0x8FDC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==291652== by 0x8FDC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==291652== by 0x8F92922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==291652== by 0x8F372DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==291652== by 0x61DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==291652== by 0x6176D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==291652== by 0x4A96D38: PetscInitialize (pinit.c:924) ==291652== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==291652== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==291652== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==291652== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==291652== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==291652== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==291652== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==291652== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==291652== ==291652== Open file descriptor 115: ==291652== ==291652== ==291652== Open file descriptor 112: ==291652== ==291652== ==291652== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==291652== ==291652== ==291652== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==291652== ==291652== ==291652== ==291652== HEAP SUMMARY: ==291652== in use at exit: 700,754 bytes in 9,387 blocks ==291652== total heap usage: 117,319 allocs, 107,932 frees, 1,427,862,516 bytes allocated ==291652== ==291652== LEAK SUMMARY: ==291652== definitely lost: 0 bytes in 0 blocks ==291652== indirectly lost: 0 bytes in 0 blocks ==291652== possibly lost: 0 bytes in 0 blocks ==291652== still reachable: 24 bytes in 2 blocks ==291652== suppressed: 700,730 bytes in 9,385 blocks ==291652== Reachable blocks (those to which a pointer was found) are not shown. ==291652== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==291652== ==291652== For lists of detected and suppressed errors, rerun with: -s ==291652== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)