==293493== Memcheck, a memory error detector ==293493== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==293493== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==293493== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info ==293493== Parent PID: 291395 ==293493== ==293493== ==293493== FILE DESCRIPTORS: 9 open (3 std) at exit. ==293493== Open file descriptor 12: ==293493== at 0x10CD022D: pipe (pipe.c:29) ==293493== by 0x1968D07D: ??? ==293493== by 0x14BF04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293493== by 0x105D8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293493== by 0x10571D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293493== by 0xF268D38: PetscInitialize (pinit.c:924) ==293493== by 0xF0DD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293493== by 0xF0DD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293493== by 0x150109: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==293493== by 0x1489AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293493== by 0x14BA82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== ==293493== Open file descriptor 8: /dev/shm/open_mpi.0000 ==293493== at 0x10CD4BCC: __open_nocancel (open64_nocancel.c:39) ==293493== by 0x10C58C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==293493== by 0xF112822: ??? ==293493== by 0xF11296F: ??? ==293493== by 0x14C956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293493== by 0x14C95938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293493== by 0x14C4B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293493== by 0x14BF02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293493== by 0x105D8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293493== by 0x10571D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293493== by 0xF268D38: PetscInitialize (pinit.c:924) ==293493== by 0xF0DD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293493== by 0xF0DD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293493== by 0x150109: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==293493== by 0x1489AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293493== by 0x14BA82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== ==293493== Open file descriptor 115: ==293493== ==293493== ==293493== Open file descriptor 112: ==293493== ==293493== ==293493== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt ==293493== ==293493== ==293493== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==293493== ==293493== ==293493== ==293493== HEAP SUMMARY: ==293493== in use at exit: 700,946 bytes in 9,382 blocks ==293493== total heap usage: 2,138,206 allocs, 2,128,824 frees, 1,516,957,622 bytes allocated ==293493== ==293493== 48 bytes in 1 blocks are definitely lost in loss record 27 of 70 ==293493== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==293493== by 0xE6C9A87: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==293493== by 0x1581F1: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:312) ==293493== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==293493== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==293493== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==293493== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==293493== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==293493== 48 bytes in 1 blocks are definitely lost in loss record 28 of 70 ==293493== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==293493== by 0xE6C9C01: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==293493== by 0x1581F1: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:312) ==293493== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==293493== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==293493== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==293493== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==293493== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==293493== 48 bytes in 1 blocks are definitely lost in loss record 29 of 70 ==293493== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==293493== by 0xE6C9A87: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==293493== by 0x15945F: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:381) ==293493== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==293493== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==293493== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==293493== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==293493== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==293493== 48 bytes in 1 blocks are definitely lost in loss record 30 of 70 ==293493== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==293493== by 0xE6C9C01: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==293493== by 0x15945F: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:381) ==293493== by 0x164B24: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==293493== by 0x148091: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==293493== by 0x14BD30: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==293493== by 0x14BC15: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==293493== by 0x14BABB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==293493== by 0x14B922: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293493== by 0x14BFB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293493== by 0x146DD5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==293493== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==293493== LEAK SUMMARY: ==293493== definitely lost: 192 bytes in 4 blocks ==293493== indirectly lost: 0 bytes in 0 blocks ==293493== possibly lost: 0 bytes in 0 blocks ==293493== still reachable: 56 bytes in 3 blocks ==293493== suppressed: 700,698 bytes in 9,375 blocks ==293493== Reachable blocks (those to which a pointer was found) are not shown. ==293493== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==293493== ==293493== For lists of detected and suppressed errors, rerun with: -s ==293493== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 37 from 37)