==436419== Memcheck, a memory error detector ==436419== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==436419== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==436419== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==436419== Parent PID: 434199 ==436419== ==436419== ==436419== FILE DESCRIPTORS: 9 open (3 std) at exit. ==436419== Open file descriptor 12: ==436419== at 0x10DB722D: pipe (pipe.c:29) ==436419== by 0x1968D07D: ??? ==436419== by 0x14BF04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==436419== by 0x105D8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==436419== by 0x10571D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==436419== by 0xF268D38: PetscInitialize (pinit.c:924) ==436419== by 0xF0DD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==436419== by 0xF0DD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==436419== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==436419== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==436419== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==436419== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==436419== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==436419== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==436419== ==436419== Open file descriptor 8: /dev/shm/open_mpi.0000 ==436419== at 0x10DBBBCC: __open_nocancel (open64_nocancel.c:39) ==436419== by 0x10D3FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==436419== by 0xF112822: ??? ==436419== by 0xF11296F: ??? ==436419== by 0x14C956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==436419== by 0x14C95938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==436419== by 0x14C4B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==436419== by 0x14BF02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==436419== by 0x105D8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==436419== by 0x10571D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==436419== by 0xF268D38: PetscInitialize (pinit.c:924) ==436419== by 0xF0DD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==436419== by 0xF0DD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==436419== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==436419== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==436419== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==436419== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==436419== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==436419== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==436419== ==436419== Open file descriptor 115: ==436419== ==436419== ==436419== Open file descriptor 112: ==436419== ==436419== ==436419== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==436419== ==436419== ==436419== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==436419== ==436419== ==436419== ==436419== HEAP SUMMARY: ==436419== in use at exit: 700,754 bytes in 9,378 blocks ==436419== total heap usage: 857,071 allocs, 847,693 frees, 1,519,168,166 bytes allocated ==436419== ==436419== LEAK SUMMARY: ==436419== definitely lost: 0 bytes in 0 blocks ==436419== indirectly lost: 0 bytes in 0 blocks ==436419== possibly lost: 0 bytes in 0 blocks ==436419== still reachable: 56 bytes in 3 blocks ==436419== suppressed: 700,698 bytes in 9,375 blocks ==436419== Reachable blocks (those to which a pointer was found) are not shown. ==436419== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==436419== ==436419== For lists of detected and suppressed errors, rerun with: -s ==436419== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)