==949617== Memcheck, a memory error detector ==949617== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==949617== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==949617== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==949617== Parent PID: 933629 ==949617== ==949617== ==949617== FILE DESCRIPTORS: 9 open (3 std) at exit. ==949617== Open file descriptor 12: ==949617== at 0x111D922D: pipe (pipe.c:29) ==949617== by 0x1B36607D: ??? ==949617== by 0x165704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==949617== by 0x12E35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==949617== by 0x12DCED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==949617== by 0x11AC5D38: PetscInitialize (pinit.c:924) ==949617== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==949617== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==949617== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==949617== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==949617== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==949617== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==949617== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==949617== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==949617== ==949617== Open file descriptor 8: /dev/shm/open_mpi.0000 ==949617== at 0x111DDBCC: __open_nocancel (open64_nocancel.c:39) ==949617== by 0x11161C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==949617== by 0x109E9822: ??? ==949617== by 0x109E996F: ??? ==949617== by 0x166156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==949617== by 0x16615938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==949617== by 0x165CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==949617== by 0x165702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==949617== by 0x12E35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==949617== by 0x12DCED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==949617== by 0x11AC5D38: PetscInitialize (pinit.c:924) ==949617== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==949617== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==949617== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==949617== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==949617== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==949617== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==949617== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==949617== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==949617== ==949617== Open file descriptor 115: ==949617== ==949617== ==949617== Open file descriptor 112: ==949617== ==949617== ==949617== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==949617== ==949617== ==949617== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==949617== ==949617== ==949617== ==949617== HEAP SUMMARY: ==949617== in use at exit: 700,702 bytes in 9,374 blocks ==949617== total heap usage: 6,310,179 allocs, 6,300,805 frees, 2,072,761,545 bytes allocated ==949617== ==949617== LEAK SUMMARY: ==949617== definitely lost: 0 bytes in 0 blocks ==949617== indirectly lost: 0 bytes in 0 blocks ==949617== possibly lost: 0 bytes in 0 blocks ==949617== still reachable: 56 bytes in 3 blocks ==949617== suppressed: 700,646 bytes in 9,371 blocks ==949617== Reachable blocks (those to which a pointer was found) are not shown. ==949617== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==949617== ==949617== For lists of detected and suppressed errors, rerun with: -s ==949617== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)