==935711== Memcheck, a memory error detector ==935711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==935711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==935711== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info ==935711== Parent PID: 933629 ==935711== ==935711== ==935711== FILE DESCRIPTORS: 9 open (3 std) at exit. ==935711== Open file descriptor 12: ==935711== at 0x10CE722D: pipe (pipe.c:29) ==935711== by 0x196A507D: ??? ==935711== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==935711== by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==935711== by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==935711== by 0xF27FD38: PetscInitialize (pinit.c:924) ==935711== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==935711== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==935711== by 0x15114D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==935711== by 0x1499CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==935711== by 0x14CAA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== ==935711== Open file descriptor 8: /dev/shm/open_mpi.0000 ==935711== at 0x10CEBBCC: __open_nocancel (open64_nocancel.c:39) ==935711== by 0x10C6FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==935711== by 0xF129822: ??? ==935711== by 0xF12996F: ??? ==935711== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==935711== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==935711== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==935711== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==935711== by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==935711== by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==935711== by 0xF27FD38: PetscInitialize (pinit.c:924) ==935711== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==935711== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==935711== by 0x15114D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==935711== by 0x1499CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==935711== by 0x14CAA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== ==935711== Open file descriptor 115: ==935711== ==935711== ==935711== Open file descriptor 112: ==935711== ==935711== ==935711== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt ==935711== ==935711== ==935711== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==935711== ==935711== ==935711== ==935711== HEAP SUMMARY: ==935711== in use at exit: 700,946 bytes in 9,382 blocks ==935711== total heap usage: 2,837,540 allocs, 2,828,158 frees, 1,569,379,276 bytes allocated ==935711== ==935711== 48 bytes in 1 blocks are definitely lost in loss record 27 of 70 ==935711== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==935711== by 0xE6DC105: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==935711== by 0x1598DD: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:348) ==935711== by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==935711== by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==935711== by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==935711== by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==935711== by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==935711== 48 bytes in 1 blocks are definitely lost in loss record 28 of 70 ==935711== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==935711== by 0xE6DC27F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==935711== by 0x1598DD: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:348) ==935711== by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==935711== by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==935711== by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==935711== by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==935711== by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==935711== 48 bytes in 1 blocks are definitely lost in loss record 29 of 70 ==935711== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==935711== by 0xE6DC105: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==935711== by 0x15AB4B: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:417) ==935711== by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==935711== by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==935711== by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==935711== by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==935711== by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==935711== 48 bytes in 1 blocks are definitely lost in loss record 30 of 70 ==935711== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==935711== by 0xE6DC27F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154) ==935711== by 0x15AB4B: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:417) ==935711== by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61) ==935711== by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==935711== by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==935711== by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==935711== by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==935711== by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==935711== by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==935711== by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19) ==935711== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==935711== LEAK SUMMARY: ==935711== definitely lost: 192 bytes in 4 blocks ==935711== indirectly lost: 0 bytes in 0 blocks ==935711== possibly lost: 0 bytes in 0 blocks ==935711== still reachable: 56 bytes in 3 blocks ==935711== suppressed: 700,698 bytes in 9,375 blocks ==935711== Reachable blocks (those to which a pointer was found) are not shown. ==935711== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==935711== ==935711== For lists of detected and suppressed errors, rerun with: -s ==935711== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 37 from 37)