==951889== Memcheck, a memory error detector ==951889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==951889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==951889== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==951889== Parent PID: 933629 ==951889== ==951889== Warning: invalid file descriptor -1 in syscall close() ==951889== ==951889== FILE DESCRIPTORS: 9 open (3 std) at exit. ==951889== Open file descriptor 12: ==951889== at 0xC0F722D: pipe (pipe.c:29) ==951889== by 0x1431D07D: ??? ==951889== by 0xFFE24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==951889== by 0xB9E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==951889== by 0xB97ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==951889== by 0xA2C0D38: PetscInitialize (pinit.c:924) ==951889== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==951889== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==951889== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==951889== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==951889== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==951889== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==951889== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==951889== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==951889== ==951889== Open file descriptor 8: /dev/shm/open_mpi.0000 ==951889== at 0xC0FBBCC: __open_nocancel (open64_nocancel.c:39) ==951889== by 0xC07FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==951889== by 0xA168822: ??? ==951889== by 0xA16896F: ??? ==951889== by 0x100876DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==951889== by 0x10087938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==951889== by 0x1003D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==951889== by 0xFFE22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==951889== by 0xB9E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==951889== by 0xB97ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==951889== by 0xA2C0D38: PetscInitialize (pinit.c:924) ==951889== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==951889== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==951889== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==951889== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==951889== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==951889== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==951889== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==951889== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==951889== ==951889== Open file descriptor 115: ==951889== ==951889== ==951889== Open file descriptor 112: ==951889== ==951889== ==951889== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==951889== ==951889== ==951889== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==951889== ==951889== ==951889== ==951889== HEAP SUMMARY: ==951889== in use at exit: 701,150 bytes in 9,383 blocks ==951889== total heap usage: 6,620,462 allocs, 6,611,079 frees, 4,033,897,138 bytes allocated ==951889== ==951889== LEAK SUMMARY: ==951889== definitely lost: 0 bytes in 0 blocks ==951889== indirectly lost: 0 bytes in 0 blocks ==951889== possibly lost: 0 bytes in 0 blocks ==951889== still reachable: 24 bytes in 2 blocks ==951889== suppressed: 701,126 bytes in 9,381 blocks ==951889== Reachable blocks (those to which a pointer was found) are not shown. ==951889== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==951889== ==951889== For lists of detected and suppressed errors, rerun with: -s ==951889== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)