==1353676== Memcheck, a memory error detector ==1353676== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1353676== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1353676== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1353676== Parent PID: 1338220 ==1353676== ==1353676== ==1353676== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1353676== Open file descriptor 12: ==1353676== at 0xEF0522D: pipe (pipe.c:29) ==1353676== by 0x18A1F07D: ??? ==1353676== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1353676== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1353676== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1353676== by 0xF496D38: PetscInitialize (pinit.c:924) ==1353676== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1353676== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1353676== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1353676== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1353676== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1353676== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1353676== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1353676== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1353676== ==1353676== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1353676== at 0xEF09BCC: __open_nocancel (open64_nocancel.c:39) ==1353676== by 0xEE8DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1353676== by 0xE840822: ??? ==1353676== by 0xE84096F: ??? ==1353676== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1353676== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1353676== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1353676== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1353676== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1353676== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1353676== by 0xF496D38: PetscInitialize (pinit.c:924) ==1353676== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1353676== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1353676== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1353676== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1353676== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1353676== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1353676== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1353676== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1353676== ==1353676== Open file descriptor 116: ==1353676== ==1353676== ==1353676== Open file descriptor 112: ==1353676== ==1353676== ==1353676== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1353676== ==1353676== ==1353676== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1353676== ==1353676== ==1353676== ==1353676== HEAP SUMMARY: ==1353676== in use at exit: 700,759 bytes in 9,378 blocks ==1353676== total heap usage: 2,085,930 allocs, 2,076,552 frees, 1,689,930,042 bytes allocated ==1353676== ==1353676== LEAK SUMMARY: ==1353676== definitely lost: 0 bytes in 0 blocks ==1353676== indirectly lost: 0 bytes in 0 blocks ==1353676== possibly lost: 0 bytes in 0 blocks ==1353676== still reachable: 56 bytes in 3 blocks ==1353676== suppressed: 700,703 bytes in 9,375 blocks ==1353676== Reachable blocks (those to which a pointer was found) are not shown. ==1353676== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1353676== ==1353676== For lists of detected and suppressed errors, rerun with: -s ==1353676== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)