==1803614== Memcheck, a memory error detector ==1803614== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1803614== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1803614== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1803614== Parent PID: 1787640 ==1803614== ==1803614== ==1803614== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1803614== Open file descriptor 12: ==1803614== at 0x111D922D: pipe (pipe.c:29) ==1803614== by 0x1B36607D: ??? ==1803614== by 0x165704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1803614== by 0x12E35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803614== by 0x12DCED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803614== by 0x11AC5D38: PetscInitialize (pinit.c:924) ==1803614== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1803614== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1803614== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1803614== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1803614== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1803614== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1803614== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1803614== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1803614== ==1803614== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1803614== at 0x111DDBCC: __open_nocancel (open64_nocancel.c:39) ==1803614== by 0x11161C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1803614== by 0x109E9822: ??? ==1803614== by 0x109E996F: ??? ==1803614== by 0x166156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803614== by 0x16615938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803614== by 0x165CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803614== by 0x165702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1803614== by 0x12E35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803614== by 0x12DCED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803614== by 0x11AC5D38: PetscInitialize (pinit.c:924) ==1803614== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1803614== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1803614== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1803614== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1803614== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1803614== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1803614== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1803614== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1803614== ==1803614== Open file descriptor 116: ==1803614== ==1803614== ==1803614== Open file descriptor 112: ==1803614== ==1803614== ==1803614== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1803614== ==1803614== ==1803614== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1803614== ==1803614== ==1803614== ==1803614== HEAP SUMMARY: ==1803614== in use at exit: 700,704 bytes in 9,374 blocks ==1803614== total heap usage: 6,313,679 allocs, 6,304,305 frees, 2,073,034,863 bytes allocated ==1803614== ==1803614== LEAK SUMMARY: ==1803614== definitely lost: 0 bytes in 0 blocks ==1803614== indirectly lost: 0 bytes in 0 blocks ==1803614== possibly lost: 0 bytes in 0 blocks ==1803614== still reachable: 56 bytes in 3 blocks ==1803614== suppressed: 700,648 bytes in 9,371 blocks ==1803614== Reachable blocks (those to which a pointer was found) are not shown. ==1803614== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1803614== ==1803614== For lists of detected and suppressed errors, rerun with: -s ==1803614== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)