==1789731== Memcheck, a memory error detector
==1789731== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==1789731== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==1789731== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info
==1789731== Parent PID: 1787640
==1789731== 
==1789731== 
==1789731== FILE DESCRIPTORS: 9 open (3 std) at exit.
==1789731== Open file descriptor 12:
==1789731==    at 0x10CE722D: pipe (pipe.c:29)
==1789731==    by 0x196A507D: ???
==1789731==    by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1789731==    by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1789731==    by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1789731==    by 0xF27FD38: PetscInitialize (pinit.c:924)
==1789731==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1789731==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1789731==    by 0x15114D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1789731==    by 0x1499CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1789731==    by 0x14CAA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
==1789731== Open file descriptor 8: /dev/shm/open_mpi.0000
==1789731==    at 0x10CEBBCC: __open_nocancel (open64_nocancel.c:39)
==1789731==    by 0x10C6FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==1789731==    by 0xF129822: ???
==1789731==    by 0xF12996F: ???
==1789731==    by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1789731==    by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1789731==    by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1789731==    by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1789731==    by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1789731==    by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1789731==    by 0xF27FD38: PetscInitialize (pinit.c:924)
==1789731==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1789731==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1789731==    by 0x15114D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1789731==    by 0x1499CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1789731==    by 0x14CAA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
==1789731== Open file descriptor 116:
==1789731==    <inherited from parent>
==1789731== 
==1789731== Open file descriptor 112:
==1789731==    <inherited from parent>
==1789731== 
==1789731== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt
==1789731==    <inherited from parent>
==1789731== 
==1789731== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==1789731==    <inherited from parent>
==1789731== 
==1789731== 
==1789731== HEAP SUMMARY:
==1789731==     in use at exit: 700,951 bytes in 9,382 blocks
==1789731==   total heap usage: 2,837,551 allocs, 2,828,169 frees, 1,569,389,269 bytes allocated
==1789731== 
==1789731== 48 bytes in 1 blocks are definitely lost in loss record 27 of 70
==1789731==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1789731==    by 0xE6DC105: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134)
==1789731==    by 0x1598DD: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:355)
==1789731==    by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61)
==1789731==    by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1789731==    by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1789731==    by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1789731==    by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj
   fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv
   fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1789731== 48 bytes in 1 blocks are definitely lost in loss record 28 of 70
==1789731==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1789731==    by 0xE6DC27F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154)
==1789731==    by 0x1598DD: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:355)
==1789731==    by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61)
==1789731==    by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1789731==    by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1789731==    by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1789731==    by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj
   fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv
   fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1789731== 48 bytes in 1 blocks are definitely lost in loss record 29 of 70
==1789731==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1789731==    by 0xE6DC105: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134)
==1789731==    by 0x15AB4B: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:427)
==1789731==    by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61)
==1789731==    by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1789731==    by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1789731==    by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1789731==    by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj
   fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv
   fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1789731== 48 bytes in 1 blocks are definitely lost in loss record 30 of 70
==1789731==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1789731==    by 0xE6DC27F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:154)
==1789731==    by 0x15AB4B: TestImmersedBoundarySimulationModifier::TestPropagateFluidSourcesToGrid() (TestImmersedBoundarySimulationModifier.hpp:427)
==1789731==    by 0x166E8C: TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid::runTest() (TestImmersedBoundarySimulationModifier.cpp:61)
==1789731==    by 0x1490B1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1789731==    by 0x14CD50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1789731==    by 0x14CC35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1789731==    by 0x14CADB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1789731==    by 0x14C942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1789731==    by 0x14CFD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1789731==    by 0x147DF5: main (TestImmersedBoundarySimulationModifier.cpp:19)
==1789731== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj
   fun:_ZN38TestImmersedBoundarySimulationModifier31TestPropagateFluidSourcesToGridEv
   fun:_ZN86TestDescription_TestImmersedBoundarySimulationModifier_TestPropagateFluidSourcesToGrid7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1789731== LEAK SUMMARY:
==1789731==    definitely lost: 192 bytes in 4 blocks
==1789731==    indirectly lost: 0 bytes in 0 blocks
==1789731==      possibly lost: 0 bytes in 0 blocks
==1789731==    still reachable: 56 bytes in 3 blocks
==1789731==         suppressed: 700,703 bytes in 9,375 blocks
==1789731== Reachable blocks (those to which a pointer was found) are not shown.
==1789731== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==1789731== 
==1789731== For lists of detected and suppressed errors, rerun with: -s
==1789731== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 37 from 37)