==1803868== Memcheck, a memory error detector ==1803868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1803868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1803868== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==1803868== Parent PID: 1787640 ==1803868== ==1803868== ==1803868== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1803868== Open file descriptor 12: ==1803868== at 0x1256522D: pipe (pipe.c:29) ==1803868== by 0x1B36607D: ??? ==1803868== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1803868== by 0x11E6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803868== by 0x11E06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803868== by 0x10ADDD38: PetscInitialize (pinit.c:924) ==1803868== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1803868== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1803868== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1803868== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1803868== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1803868== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1803868== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1803868== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==1803868== ==1803868== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1803868== at 0x12569BCC: __open_nocancel (open64_nocancel.c:39) ==1803868== by 0x124EDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1803868== by 0x11D67822: ??? ==1803868== by 0x11D6796F: ??? ==1803868== by 0x165776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803868== by 0x16577938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803868== by 0x1652D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1803868== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1803868== by 0x11E6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803868== by 0x11E06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1803868== by 0x10ADDD38: PetscInitialize (pinit.c:924) ==1803868== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1803868== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1803868== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1803868== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1803868== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1803868== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1803868== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1803868== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==1803868== ==1803868== Open file descriptor 116: ==1803868== ==1803868== ==1803868== Open file descriptor 112: ==1803868== ==1803868== ==1803868== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==1803868== ==1803868== ==1803868== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1803868== ==1803868== ==1803868== ==1803868== HEAP SUMMARY: ==1803868== in use at exit: 700,704 bytes in 9,374 blocks ==1803868== total heap usage: 16,188,495 allocs, 16,179,121 frees, 2,845,043,786 bytes allocated ==1803868== ==1803868== LEAK SUMMARY: ==1803868== definitely lost: 0 bytes in 0 blocks ==1803868== indirectly lost: 0 bytes in 0 blocks ==1803868== possibly lost: 0 bytes in 0 blocks ==1803868== still reachable: 56 bytes in 3 blocks ==1803868== suppressed: 700,648 bytes in 9,371 blocks ==1803868== Reachable blocks (those to which a pointer was found) are not shown. ==1803868== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1803868== ==1803868== For lists of detected and suppressed errors, rerun with: -s ==1803868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)