==2016070== Memcheck, a memory error detector ==2016070== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2016070== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2016070== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info ==2016070== Parent PID: 1999474 ==2016070== ==2016070== ==2016070== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2016070== Open file descriptor 12: ==2016070== at 0xC0DF22D: pipe (pipe.c:29) ==2016070== by 0x1431D07D: ??? ==2016070== by 0xFAD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016070== by 0xB9CD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016070== by 0xB966D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016070== by 0xA65DD38: PetscInitialize (pinit.c:924) ==2016070== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016070== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016070== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016070== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016070== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016070== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016070== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016070== by 0x138285: main (TestBidomainProblem.cpp:19) ==2016070== ==2016070== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2016070== at 0xC0E3BCC: __open_nocancel (open64_nocancel.c:39) ==2016070== by 0xC067C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2016070== by 0xA505822: ??? ==2016070== by 0xA50596F: ??? ==2016070== by 0xFB7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016070== by 0xFB7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016070== by 0xFB33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016070== by 0xFAD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016070== by 0xB9CD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016070== by 0xB966D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016070== by 0xA65DD38: PetscInitialize (pinit.c:924) ==2016070== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016070== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016070== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016070== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016070== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016070== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016070== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016070== by 0x138285: main (TestBidomainProblem.cpp:19) ==2016070== ==2016070== Open file descriptor 116: ==2016070== ==2016070== ==2016070== Open file descriptor 112: ==2016070== ==2016070== ==2016070== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt ==2016070== ==2016070== ==2016070== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2016070== ==2016070== ==2016070== ==2016070== HEAP SUMMARY: ==2016070== in use at exit: 701,223 bytes in 9,387 blocks ==2016070== total heap usage: 588,923 allocs, 579,536 frees, 1,564,825,134 bytes allocated ==2016070== ==2016070== LEAK SUMMARY: ==2016070== definitely lost: 0 bytes in 0 blocks ==2016070== indirectly lost: 0 bytes in 0 blocks ==2016070== possibly lost: 0 bytes in 0 blocks ==2016070== still reachable: 24 bytes in 2 blocks ==2016070== suppressed: 701,199 bytes in 9,385 blocks ==2016070== Reachable blocks (those to which a pointer was found) are not shown. ==2016070== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2016070== ==2016070== For lists of detected and suppressed errors, rerun with: -s ==2016070== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 36)