==2016128== Memcheck, a memory error detector ==2016128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2016128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2016128== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info ==2016128== Parent PID: 1999474 ==2016128== ==2016128== ==2016128== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2016128== Open file descriptor 12: ==2016128== at 0xA98022D: pipe (pipe.c:29) ==2016128== by 0x1431D07D: ??? ==2016128== by 0xD9074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016128== by 0xA26E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016128== by 0xA207D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016128== by 0xAD0AD38: PetscInitialize (pinit.c:924) ==2016128== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016128== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016128== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016128== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016128== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016128== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016128== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016128== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==2016128== ==2016128== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2016128== at 0xA984BCC: __open_nocancel (open64_nocancel.c:39) ==2016128== by 0xA908C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2016128== by 0xA168822: ??? ==2016128== by 0xA16896F: ??? ==2016128== by 0xD9AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016128== by 0xD9AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016128== by 0xD962922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016128== by 0xD9072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016128== by 0xA26E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016128== by 0xA207D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016128== by 0xAD0AD38: PetscInitialize (pinit.c:924) ==2016128== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016128== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016128== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016128== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016128== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016128== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016128== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016128== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==2016128== ==2016128== Open file descriptor 116: ==2016128== ==2016128== ==2016128== Open file descriptor 112: ==2016128== ==2016128== ==2016128== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt ==2016128== ==2016128== ==2016128== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2016128== ==2016128== ==2016128== ==2016128== HEAP SUMMARY: ==2016128== in use at exit: 701,152 bytes in 9,383 blocks ==2016128== total heap usage: 2,375,555 allocs, 2,366,172 frees, 2,483,512,297 bytes allocated ==2016128== ==2016128== LEAK SUMMARY: ==2016128== definitely lost: 0 bytes in 0 blocks ==2016128== indirectly lost: 0 bytes in 0 blocks ==2016128== possibly lost: 0 bytes in 0 blocks ==2016128== still reachable: 24 bytes in 2 blocks ==2016128== suppressed: 701,128 bytes in 9,381 blocks ==2016128== Reachable blocks (those to which a pointer was found) are not shown. ==2016128== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2016128== ==2016128== For lists of detected and suppressed errors, rerun with: -s ==2016128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 32)