==1999733== Memcheck, a memory error detector ==1999733== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1999733== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1999733== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1999733== Parent PID: 1999474 ==1999733== ==1999733== ==1999733== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1999733== Open file descriptor 12: ==1999733== at 0x645722D: pipe (pipe.c:29) ==1999733== by 0xAF1707D: ??? ==1999733== by 0x8F374CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1999733== by 0x6651418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1999733== by 0x65EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1999733== by 0x4A96D38: PetscInitialize (pinit.c:924) ==1999733== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1999733== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1999733== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1999733== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1999733== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1999733== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1999733== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1999733== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1999733== ==1999733== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1999733== at 0x645BBCC: __open_nocancel (open64_nocancel.c:39) ==1999733== by 0x63DFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1999733== by 0x5D20822: ??? ==1999733== by 0x5D2096F: ??? ==1999733== by 0x8FDC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1999733== by 0x8FDC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1999733== by 0x8F92922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1999733== by 0x8F372DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1999733== by 0x6651418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1999733== by 0x65EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1999733== by 0x4A96D38: PetscInitialize (pinit.c:924) ==1999733== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1999733== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1999733== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1999733== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1999733== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1999733== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1999733== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1999733== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==1999733== ==1999733== Open file descriptor 116: ==1999733== ==1999733== ==1999733== Open file descriptor 112: ==1999733== ==1999733== ==1999733== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1999733== ==1999733== ==1999733== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1999733== ==1999733== ==1999733== ==1999733== HEAP SUMMARY: ==1999733== in use at exit: 700,759 bytes in 9,387 blocks ==1999733== total heap usage: 60,795 allocs, 51,408 frees, 1,363,849,365 bytes allocated ==1999733== ==1999733== LEAK SUMMARY: ==1999733== definitely lost: 0 bytes in 0 blocks ==1999733== indirectly lost: 0 bytes in 0 blocks ==1999733== possibly lost: 0 bytes in 0 blocks ==1999733== still reachable: 24 bytes in 2 blocks ==1999733== suppressed: 700,735 bytes in 9,385 blocks ==1999733== Reachable blocks (those to which a pointer was found) are not shown. ==1999733== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1999733== ==1999733== For lists of detected and suppressed errors, rerun with: -s ==1999733== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)