==2016911== Memcheck, a memory error detector ==2016911== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2016911== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2016911== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info ==2016911== Parent PID: 1999474 ==2016911== ==2016911== ==2016911== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2016911== Open file descriptor 12: ==2016911== at 0x856B22D: pipe (pipe.c:29) ==2016911== by 0x1431E07D: ??? ==2016911== by 0xEE164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016911== by 0x9C65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016911== by 0x9BFED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016911== by 0x88F5D38: PetscInitialize (pinit.c:924) ==2016911== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016911== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016911== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016911== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016911== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016911== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016911== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016911== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==2016911== ==2016911== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2016911== at 0x856FBCC: __open_nocancel (open64_nocancel.c:39) ==2016911== by 0x84F3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2016911== by 0x81CF822: ??? ==2016911== by 0x81CF96F: ??? ==2016911== by 0xEEBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016911== by 0xEEBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016911== by 0xEE71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2016911== by 0xEE162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2016911== by 0x9C65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016911== by 0x9BFED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2016911== by 0x88F5D38: PetscInitialize (pinit.c:924) ==2016911== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2016911== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2016911== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2016911== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2016911== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2016911== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2016911== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2016911== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==2016911== ==2016911== Open file descriptor 116: ==2016911== ==2016911== ==2016911== Open file descriptor 112: ==2016911== ==2016911== ==2016911== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt ==2016911== ==2016911== ==2016911== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2016911== ==2016911== ==2016911== ==2016911== HEAP SUMMARY: ==2016911== in use at exit: 700,743 bytes in 9,377 blocks ==2016911== total heap usage: 51,269 allocs, 41,892 frees, 1,353,610,376 bytes allocated ==2016911== ==2016911== LEAK SUMMARY: ==2016911== definitely lost: 0 bytes in 0 blocks ==2016911== indirectly lost: 0 bytes in 0 blocks ==2016911== possibly lost: 0 bytes in 0 blocks ==2016911== still reachable: 24 bytes in 2 blocks ==2016911== suppressed: 700,719 bytes in 9,375 blocks ==2016911== Reachable blocks (those to which a pointer was found) are not shown. ==2016911== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2016911== ==2016911== For lists of detected and suppressed errors, rerun with: -s ==2016911== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)