==2001853== Memcheck, a memory error detector ==2001853== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2001853== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2001853== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==2001853== Parent PID: 1999474 ==2001853== ==2001853== ==2001853== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2001853== Open file descriptor 12: ==2001853== at 0xF8D522D: pipe (pipe.c:29) ==2001853== by 0x196A507D: ??? ==2001853== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2001853== by 0x11575418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2001853== by 0x1150ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2001853== by 0x10205D38: PetscInitialize (pinit.c:924) ==2001853== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2001853== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2001853== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2001853== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2001853== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2001853== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2001853== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2001853== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2001853== ==2001853== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2001853== at 0xF8D9BCC: __open_nocancel (open64_nocancel.c:39) ==2001853== by 0xF85DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2001853== by 0xF129822: ??? ==2001853== by 0xF12996F: ??? ==2001853== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2001853== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2001853== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2001853== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2001853== by 0x11575418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2001853== by 0x1150ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2001853== by 0x10205D38: PetscInitialize (pinit.c:924) ==2001853== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2001853== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2001853== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2001853== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2001853== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2001853== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2001853== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2001853== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2001853== ==2001853== Open file descriptor 116: ==2001853== ==2001853== ==2001853== Open file descriptor 112: ==2001853== ==2001853== ==2001853== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==2001853== ==2001853== ==2001853== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2001853== ==2001853== ==2001853== ==2001853== HEAP SUMMARY: ==2001853== in use at exit: 700,688 bytes in 9,374 blocks ==2001853== total heap usage: 6,678,647 allocs, 6,669,273 frees, 9,011,199,459 bytes allocated ==2001853== ==2001853== LEAK SUMMARY: ==2001853== definitely lost: 0 bytes in 0 blocks ==2001853== indirectly lost: 0 bytes in 0 blocks ==2001853== possibly lost: 0 bytes in 0 blocks ==2001853== still reachable: 56 bytes in 3 blocks ==2001853== suppressed: 700,632 bytes in 9,371 blocks ==2001853== Reachable blocks (those to which a pointer was found) are not shown. ==2001853== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2001853== ==2001853== For lists of detected and suppressed errors, rerun with: -s ==2001853== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)