==2015193== Memcheck, a memory error detector ==2015193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2015193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2015193== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2015193== Parent PID: 1999474 ==2015193== ==2015193== ==2015193== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2015193== Open file descriptor 12: ==2015193== at 0xFB8B22D: pipe (pipe.c:29) ==2015193== by 0x196A407D: ??? ==2015193== by 0x14CA74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2015193== by 0x1148E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2015193== by 0x11427D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2015193== by 0x1011CD38: PetscInitialize (pinit.c:924) ==2015193== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2015193== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2015193== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2015193== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2015193== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2015193== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2015193== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2015193== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2015193== ==2015193== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2015193== at 0xFB8FBCC: __open_nocancel (open64_nocancel.c:39) ==2015193== by 0xFB13C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2015193== by 0xF4C6822: ??? ==2015193== by 0xF4C696F: ??? ==2015193== by 0x14D4C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2015193== by 0x14D4C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2015193== by 0x14D02922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2015193== by 0x14CA72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2015193== by 0x1148E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2015193== by 0x11427D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2015193== by 0x1011CD38: PetscInitialize (pinit.c:924) ==2015193== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2015193== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2015193== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2015193== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2015193== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2015193== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2015193== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2015193== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2015193== ==2015193== Open file descriptor 116: ==2015193== ==2015193== ==2015193== Open file descriptor 112: ==2015193== ==2015193== ==2015193== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==2015193== ==2015193== ==2015193== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2015193== ==2015193== ==2015193== ==2015193== HEAP SUMMARY: ==2015193== in use at exit: 700,759 bytes in 9,378 blocks ==2015193== total heap usage: 2,086,464 allocs, 2,077,086 frees, 1,689,978,236 bytes allocated ==2015193== ==2015193== LEAK SUMMARY: ==2015193== definitely lost: 0 bytes in 0 blocks ==2015193== indirectly lost: 0 bytes in 0 blocks ==2015193== possibly lost: 0 bytes in 0 blocks ==2015193== still reachable: 56 bytes in 3 blocks ==2015193== suppressed: 700,703 bytes in 9,375 blocks ==2015193== Reachable blocks (those to which a pointer was found) are not shown. ==2015193== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2015193== ==2015193== For lists of detected and suppressed errors, rerun with: -s ==2015193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)