==2180202== Memcheck, a memory error detector
==2180202== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==2180202== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==2180202== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info
==2180202== Parent PID: 2178034
==2180202== 
==2180202== Invalid free() / delete / delete[] / realloc()
==2180202==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2180202==    by 0xE6DE103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604)
==2180202==    by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2180202==    by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2180202==    by 0x12FEF9: std::default_delete<ImmersedBoundaryMesh<2u, 2u> >::operator()(ImmersedBoundaryMesh<2u, 2u>*) const (unique_ptr.h:85)
==2180202==    by 0x12E3F3: std::unique_ptr<ImmersedBoundaryMesh<2u, 2u>, std::default_delete<ImmersedBoundaryMesh<2u, 2u> > >::~unique_ptr() (unique_ptr.h:361)
==2180202==    by 0x12BE00: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:122)
==2180202==    by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30)
==2180202==    by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2180202==    by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2180202==    by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2180202==    by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2180202==    by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2180202==    by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2180202==    by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18)
==2180202==  Address 0x1bbe6ea0 is 0 bytes inside a block of size 48 free'd
==2180202==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2180202==    by 0xE664789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63)
==2180202==    by 0xE6647C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65)
==2180202==    by 0xE6DDF92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583)
==2180202==    by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2180202==    by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2180202==    by 0x12FEF9: std::default_delete<ImmersedBoundaryMesh<2u, 2u> >::operator()(ImmersedBoundaryMesh<2u, 2u>*) const (unique_ptr.h:85)
==2180202==    by 0x12E3F3: std::unique_ptr<ImmersedBoundaryMesh<2u, 2u>, std::default_delete<ImmersedBoundaryMesh<2u, 2u> > >::~unique_ptr() (unique_ptr.h:361)
==2180202==    by 0x12BE00: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:122)
==2180202==    by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30)
==2180202==    by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2180202==    by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2180202==    by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2180202==    by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2180202==    by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2180202==    by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2180202==    by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18)
==2180202==  Block was alloc'd at
==2180202==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2180202==    by 0xE6DC21F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134)
==2180202==    by 0x12B93F: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:90)
==2180202==    by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30)
==2180202==    by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2180202==    by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2180202==    by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2180202==    by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2180202==    by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2180202==    by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2180202==    by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18)
==2180202== 
{
   <insert_a_suppression_name_here>
   Memcheck:Free
   fun:_ZdlPvm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED0Ev
   fun:_ZNKSt14default_deleteI20ImmersedBoundaryMeshILj2ELj2EEEclEPS1_
   fun:_ZNSt10unique_ptrI20ImmersedBoundaryMeshILj2ELj2EESt14default_deleteIS1_EED1Ev
   fun:_ZN36TestShortImmersedBoundarySimulations22TestShortSingleCellSimEv
   fun:_ZN75TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2180202== 
==2180202== FILE DESCRIPTORS: 9 open (3 std) at exit.
==2180202== Open file descriptor 12:
==2180202==    at 0x10CA522D: pipe (pipe.c:29)
==2180202==    by 0x196A507D: ???
==2180202==    by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2180202==    by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2180202==    by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2180202==    by 0xF21DD38: PetscInitialize (pinit.c:924)
==2180202==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2180202==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2180202==    by 0x12B2E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==2180202==    by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2180202==    by 0x128BBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2180202==    by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2180202==    by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2180202==    by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18)
==2180202== 
==2180202== Open file descriptor 8: /dev/shm/open_mpi.0000
==2180202==    at 0x10CA9BCC: __open_nocancel (open64_nocancel.c:39)
==2180202==    by 0x10C2DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==2180202==    by 0x104A7822: ???
==2180202==    by 0x104A796F: ???
==2180202==    by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2180202==    by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2180202==    by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2180202==    by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2180202==    by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2180202==    by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2180202==    by 0xF21DD38: PetscInitialize (pinit.c:924)
==2180202==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2180202==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2180202==    by 0x12B2E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==2180202==    by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2180202==    by 0x128BBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2180202==    by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2180202==    by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2180202==    by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18)
==2180202== 
==2180202== Open file descriptor 116:
==2180202==    <inherited from parent>
==2180202== 
==2180202== Open file descriptor 112:
==2180202==    <inherited from parent>
==2180202== 
==2180202== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt
==2180202==    <inherited from parent>
==2180202== 
==2180202== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==2180202==    <inherited from parent>
==2180202== 
==2180202== 
==2180202== HEAP SUMMARY:
==2180202==     in use at exit: 700,688 bytes in 9,374 blocks
==2180202==   total heap usage: 2,317,391 allocs, 2,308,031 frees, 2,116,783,029 bytes allocated
==2180202== 
==2180202== LEAK SUMMARY:
==2180202==    definitely lost: 0 bytes in 0 blocks
==2180202==    indirectly lost: 0 bytes in 0 blocks
==2180202==      possibly lost: 0 bytes in 0 blocks
==2180202==    still reachable: 56 bytes in 3 blocks
==2180202==         suppressed: 700,632 bytes in 9,371 blocks
==2180202== Reachable blocks (those to which a pointer was found) are not shown.
==2180202== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==2180202== 
==2180202== For lists of detected and suppressed errors, rerun with: -s
==2180202== ERROR SUMMARY: 14 errors from 1 contexts (suppressed: 33 from 33)
