==2193812== Memcheck, a memory error detector
==2193812== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==2193812== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==2193812== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info
==2193812== Parent PID: 2178034
==2193812== 
==2193812== Invalid free() / delete / delete[] / realloc()
==2193812==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2193812==    by 0xE6DE103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604)
==2193812==    by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2193812==    by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2193812==    by 0xE7701F3: ImmersedBoundaryPalisadeMeshGenerator::~ImmersedBoundaryPalisadeMeshGenerator() (ImmersedBoundaryPalisadeMeshGenerator.cpp:356)
==2193812==    by 0x12257D: TestRunningImmersedBoundarySimulationsTutorial::TestImmersedBoundaryPalisadeSimulation() (TestRunningImmersedBoundarySimulationsTutorial.hpp:156)
==2193812==    by 0x1228EE: TestDescription_TestRunningImmersedBoundarySimulationsTutorial_TestImmersedBoundaryPalisadeSimulation::runTest() (TestRunningImmersedBoundarySimulationsTutorial.cpp:30)
==2193812==    by 0x11CD6A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2193812==    by 0x11FBA4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2193812==    by 0x11FA89: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2193812==    by 0x11F92F: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2193812==    by 0x11F7F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2193812==    by 0x11FE05: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2193812==    by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18)
==2193812==  Address 0x1bc9cc50 is 0 bytes inside a block of size 48 free'd
==2193812==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2193812==    by 0xE664789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63)
==2193812==    by 0xE6647C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65)
==2193812==    by 0xE6DDF92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583)
==2193812==    by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2193812==    by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2193812==    by 0xE7701F3: ImmersedBoundaryPalisadeMeshGenerator::~ImmersedBoundaryPalisadeMeshGenerator() (ImmersedBoundaryPalisadeMeshGenerator.cpp:356)
==2193812==    by 0x12257D: TestRunningImmersedBoundarySimulationsTutorial::TestImmersedBoundaryPalisadeSimulation() (TestRunningImmersedBoundarySimulationsTutorial.hpp:156)
==2193812==    by 0x1228EE: TestDescription_TestRunningImmersedBoundarySimulationsTutorial_TestImmersedBoundaryPalisadeSimulation::runTest() (TestRunningImmersedBoundarySimulationsTutorial.cpp:30)
==2193812==    by 0x11CD6A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2193812==    by 0x11FBA4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2193812==    by 0x11FA89: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2193812==    by 0x11F92F: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2193812==    by 0x11F7F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2193812==    by 0x11FE05: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2193812==    by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18)
==2193812==  Block was alloc'd at
==2193812==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2193812==    by 0xE6DC21F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134)
==2193812==    by 0xE76FA15: ImmersedBoundaryPalisadeMeshGenerator::ImmersedBoundaryPalisadeMeshGenerator(unsigned int, unsigned int, double, double, double, bool, bool, bool, unsigned int, double) (ImmersedBoundaryPalisadeMeshGenerator.cpp:350)
==2193812==    by 0x122049: TestRunningImmersedBoundarySimulationsTutorial::TestImmersedBoundaryPalisadeSimulation() (TestRunningImmersedBoundarySimulationsTutorial.hpp:106)
==2193812==    by 0x1228EE: TestDescription_TestRunningImmersedBoundarySimulationsTutorial_TestImmersedBoundaryPalisadeSimulation::runTest() (TestRunningImmersedBoundarySimulationsTutorial.cpp:30)
==2193812==    by 0x11CD6A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2193812==    by 0x11FBA4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2193812==    by 0x11FA89: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2193812==    by 0x11F92F: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2193812==    by 0x11F7F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2193812==    by 0x11FE05: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2193812==    by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18)
==2193812== 
{
   <insert_a_suppression_name_here>
   Memcheck:Free
   fun:_ZdlPvm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED0Ev
   fun:_ZN37ImmersedBoundaryPalisadeMeshGeneratorD1Ev
   fun:_ZN46TestRunningImmersedBoundarySimulationsTutorial38TestImmersedBoundaryPalisadeSimulationEv
   fun:_ZN101TestDescription_TestRunningImmersedBoundarySimulationsTutorial_TestImmersedBoundaryPalisadeSimulation7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2193812== 
==2193812== FILE DESCRIPTORS: 9 open (3 std) at exit.
==2193812== Open file descriptor 12:
==2193812==    at 0x10CA522D: pipe (pipe.c:29)
==2193812==    by 0x196A507D: ???
==2193812==    by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2193812==    by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2193812==    by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2193812==    by 0xF21DD38: PetscInitialize (pinit.c:924)
==2193812==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2193812==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2193812==    by 0x121D4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==2193812==    by 0x11D533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2193812==    by 0x11F8F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2193812==    by 0x11F7F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2193812==    by 0x11FE05: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2193812==    by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18)
==2193812== 
==2193812== Open file descriptor 8: /dev/shm/open_mpi.0000
==2193812==    at 0x10CA9BCC: __open_nocancel (open64_nocancel.c:39)
==2193812==    by 0x10C2DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==2193812==    by 0x104A7822: ???
==2193812==    by 0x104A796F: ???
==2193812==    by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2193812==    by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2193812==    by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2193812==    by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2193812==    by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2193812==    by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2193812==    by 0xF21DD38: PetscInitialize (pinit.c:924)
==2193812==    by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2193812==    by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2193812==    by 0x121D4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==2193812==    by 0x11D533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2193812==    by 0x11F8F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2193812==    by 0x11F7F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2193812==    by 0x11FE05: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2193812==    by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18)
==2193812== 
==2193812== Open file descriptor 116:
==2193812==    <inherited from parent>
==2193812== 
==2193812== Open file descriptor 112:
==2193812==    <inherited from parent>
==2193812== 
==2193812== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt
==2193812==    <inherited from parent>
==2193812== 
==2193812== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==2193812==    <inherited from parent>
==2193812== 
==2193812== 
==2193812== HEAP SUMMARY:
==2193812==     in use at exit: 700,688 bytes in 9,374 blocks
==2193812==   total heap usage: 657,217 allocs, 647,848 frees, 1,527,948,096 bytes allocated
==2193812== 
==2193812== LEAK SUMMARY:
==2193812==    definitely lost: 0 bytes in 0 blocks
==2193812==    indirectly lost: 0 bytes in 0 blocks
==2193812==      possibly lost: 0 bytes in 0 blocks
==2193812==    still reachable: 56 bytes in 3 blocks
==2193812==         suppressed: 700,632 bytes in 9,371 blocks
==2193812== Reachable blocks (those to which a pointer was found) are not shown.
==2193812== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==2193812== 
==2193812== For lists of detected and suppressed errors, rerun with: -s
==2193812== ERROR SUMMARY: 5 errors from 1 contexts (suppressed: 33 from 33)