==2291767== Memcheck, a memory error detector
==2291767== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==2291767== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==2291767== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info
==2291767== Parent PID: 2290032
==2291767== 
==2291767== Invalid free() / delete / delete[] / realloc()
==2291767==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2291767==    by 0xE923103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604)
==2291767==    by 0xE921979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2291767==    by 0xE921A59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2291767==    by 0xE905579: ImmersedBoundaryHoneycombMeshGenerator::~ImmersedBoundaryHoneycombMeshGenerator() (ImmersedBoundaryHoneycombMeshGenerator.cpp:138)
==2291767==    by 0x15AD33: TestCellWriters::TestImmersedBoundaryCellWriter() (TestCellWriters.hpp:1822)
==2291767==    by 0x15CB5C: TestDescription_TestCellWriters_TestImmersedBoundaryCellWriter::runTest() (TestCellWriters.cpp:241)
==2291767==    by 0x13C541: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2291767==    by 0x1404FA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2291767==    by 0x1403DF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2291767==    by 0x140285: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2291767==    by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2291767==    by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2291767==    by 0x13B285: main (TestCellWriters.cpp:19)
==2291767==  Address 0x1c5ff470 is 0 bytes inside a block of size 48 free'd
==2291767==    at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2291767==    by 0xE8A9789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63)
==2291767==    by 0xE8A97C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65)
==2291767==    by 0xE922F92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583)
==2291767==    by 0xE921979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524)
==2291767==    by 0xE921A59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525)
==2291767==    by 0xE905579: ImmersedBoundaryHoneycombMeshGenerator::~ImmersedBoundaryHoneycombMeshGenerator() (ImmersedBoundaryHoneycombMeshGenerator.cpp:138)
==2291767==    by 0x15AD33: TestCellWriters::TestImmersedBoundaryCellWriter() (TestCellWriters.hpp:1822)
==2291767==    by 0x15CB5C: TestDescription_TestCellWriters_TestImmersedBoundaryCellWriter::runTest() (TestCellWriters.cpp:241)
==2291767==    by 0x13C541: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2291767==    by 0x1404FA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2291767==    by 0x1403DF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2291767==    by 0x140285: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2291767==    by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2291767==    by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2291767==    by 0x13B285: main (TestCellWriters.cpp:19)
==2291767==  Block was alloc'd at
==2291767==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2291767==    by 0xE92121F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134)
==2291767==    by 0xE9052E5: ImmersedBoundaryHoneycombMeshGenerator::ImmersedBoundaryHoneycombMeshGenerator(unsigned int, unsigned int, unsigned int, double, double) (ImmersedBoundaryHoneycombMeshGenerator.cpp:133)
==2291767==    by 0x15A9B7: TestCellWriters::TestImmersedBoundaryCellWriter() (TestCellWriters.hpp:1801)
==2291767==    by 0x15CB5C: TestDescription_TestCellWriters_TestImmersedBoundaryCellWriter::runTest() (TestCellWriters.cpp:241)
==2291767==    by 0x13C541: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2291767==    by 0x1404FA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2291767==    by 0x1403DF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2291767==    by 0x140285: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2291767==    by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2291767==    by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2291767==    by 0x13B285: main (TestCellWriters.cpp:19)
==2291767== 
{
   <insert_a_suppression_name_here>
   Memcheck:Free
   fun:_ZdlPvm
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED0Ev
   fun:_ZN38ImmersedBoundaryHoneycombMeshGeneratorD1Ev
   fun:_ZN15TestCellWriters30TestImmersedBoundaryCellWriterEv
   fun:_ZN62TestDescription_TestCellWriters_TestImmersedBoundaryCellWriter7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2291767== 
==2291767== FILE DESCRIPTORS: 9 open (3 std) at exit.
==2291767== Open file descriptor 12:
==2291767==    at 0xFB0422D: pipe (pipe.c:29)
==2291767==    by 0x196A407D: ???
==2291767==    by 0x14CA74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2291767==    by 0x1148E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2291767==    by 0x11427D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2291767==    by 0x1011CD38: PetscInitialize (pinit.c:924)
==2291767==    by 0xF3C62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2291767==    by 0xF3C632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2291767==    by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2291767==    by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2291767==    by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2291767==    by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2291767==    by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2291767==    by 0x13B285: main (TestCellWriters.cpp:19)
==2291767== 
==2291767== Open file descriptor 8: /dev/shm/open_mpi.0000
==2291767==    at 0xFB08BCC: __open_nocancel (open64_nocancel.c:39)
==2291767==    by 0xFA8CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==2291767==    by 0xF3FB822: ???
==2291767==    by 0xF3FB96F: ???
==2291767==    by 0x14D4C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2291767==    by 0x14D4C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2291767==    by 0x14D02922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2291767==    by 0x14CA72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2291767==    by 0x1148E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2291767==    by 0x11427D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2291767==    by 0x1011CD38: PetscInitialize (pinit.c:924)
==2291767==    by 0xF3C62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2291767==    by 0xF3C632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2291767==    by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2291767==    by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2291767==    by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2291767==    by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2291767==    by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2291767==    by 0x13B285: main (TestCellWriters.cpp:19)
==2291767== 
==2291767== Open file descriptor 116:
==2291767==    <inherited from parent>
==2291767== 
==2291767== Open file descriptor 112:
==2291767==    <inherited from parent>
==2291767== 
==2291767== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt
==2291767==    <inherited from parent>
==2291767== 
==2291767== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==2291767==    <inherited from parent>
==2291767== 
==2291767== 
==2291767== HEAP SUMMARY:
==2291767==     in use at exit: 700,759 bytes in 9,378 blocks
==2291767==   total heap usage: 72,050 allocs, 62,690 frees, 1,357,521,382 bytes allocated
==2291767== 
==2291767== LEAK SUMMARY:
==2291767==    definitely lost: 0 bytes in 0 blocks
==2291767==    indirectly lost: 0 bytes in 0 blocks
==2291767==      possibly lost: 0 bytes in 0 blocks
==2291767==    still reachable: 56 bytes in 3 blocks
==2291767==         suppressed: 700,703 bytes in 9,375 blocks
==2291767== Reachable blocks (those to which a pointer was found) are not shown.
==2291767== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==2291767== 
==2291767== For lists of detected and suppressed errors, rerun with: -s
==2291767== ERROR SUMMARY: 18 errors from 1 contexts (suppressed: 37 from 37)
