==2290295== Memcheck, a memory error detector ==2290295== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2290295== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2290295== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==2290295== Parent PID: 2290032 ==2290295== ==2290295== Warning: invalid file descriptor -1 in syscall close() ==2290295== ==2290295== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2290295== Open file descriptor 12: ==2290295== at 0x658E22D: pipe (pipe.c:29) ==2290295== by 0xAF1707D: ??? ==2290295== by 0x8F374CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2290295== by 0x61DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2290295== by 0x6176D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2290295== by 0x4A96D38: PetscInitialize (pinit.c:924) ==2290295== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2290295== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2290295== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2290295== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2290295== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2290295== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2290295== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2290295== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==2290295== ==2290295== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2290295== at 0x6592BCC: __open_nocancel (open64_nocancel.c:39) ==2290295== by 0x6516C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2290295== by 0x5D20822: ??? ==2290295== by 0x5D2096F: ??? ==2290295== by 0x8FDC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2290295== by 0x8FDC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2290295== by 0x8F92922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2290295== by 0x8F372DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2290295== by 0x61DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2290295== by 0x6176D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2290295== by 0x4A96D38: PetscInitialize (pinit.c:924) ==2290295== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2290295== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2290295== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2290295== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2290295== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2290295== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2290295== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2290295== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==2290295== ==2290295== Open file descriptor 116: ==2290295== ==2290295== ==2290295== Open file descriptor 112: ==2290295== ==2290295== ==2290295== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==2290295== ==2290295== ==2290295== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2290295== ==2290295== ==2290295== ==2290295== HEAP SUMMARY: ==2290295== in use at exit: 700,759 bytes in 9,387 blocks ==2290295== total heap usage: 117,322 allocs, 107,935 frees, 1,427,863,404 bytes allocated ==2290295== ==2290295== LEAK SUMMARY: ==2290295== definitely lost: 0 bytes in 0 blocks ==2290295== indirectly lost: 0 bytes in 0 blocks ==2290295== possibly lost: 0 bytes in 0 blocks ==2290295== still reachable: 24 bytes in 2 blocks ==2290295== suppressed: 700,735 bytes in 9,385 blocks ==2290295== Reachable blocks (those to which a pointer was found) are not shown. ==2290295== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2290295== ==2290295== For lists of detected and suppressed errors, rerun with: -s ==2290295== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)