==2292133== Memcheck, a memory error detector ==2292133== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2292133== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2292133== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info ==2292133== Parent PID: 2290032 ==2292133== ==2292133== Invalid free() / delete / delete[] / realloc() ==2292133== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE6DE103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604) ==2292133== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292133== by 0x1442A3: TestImmersedBoundarySvgWriter::TestSetupSolve() (TestImmersedBoundarySvgWriter.hpp:136) ==2292133== by 0x1455AE: TestDescription_TestImmersedBoundarySvgWriter_TestSetupSolve::runTest() (TestImmersedBoundarySvgWriter.cpp:48) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== Address 0x1bbede60 is 0 bytes inside a block of size 48 free'd ==2292133== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE664789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63) ==2292133== by 0xE6647C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65) ==2292133== by 0xE6DDF92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583) ==2292133== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292133== by 0x1442A3: TestImmersedBoundarySvgWriter::TestSetupSolve() (TestImmersedBoundarySvgWriter.hpp:136) ==2292133== by 0x1455AE: TestDescription_TestImmersedBoundarySvgWriter_TestSetupSolve::runTest() (TestImmersedBoundarySvgWriter.cpp:48) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== Block was alloc'd at ==2292133== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE6DC21F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==2292133== by 0x143EAC: TestImmersedBoundarySvgWriter::TestSetupSolve() (TestImmersedBoundarySvgWriter.hpp:116) ==2292133== by 0x1455AE: TestDescription_TestImmersedBoundarySvgWriter_TestSetupSolve::runTest() (TestImmersedBoundarySvgWriter.cpp:48) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== { Memcheck:Free fun:_ZdlPvm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev fun:_ZN29TestImmersedBoundarySvgWriter14TestSetupSolveEv fun:_ZN60TestDescription_TestImmersedBoundarySvgWriter_TestSetupSolve7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2292133== Invalid free() / delete / delete[] / realloc() ==2292133== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE6DE103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604) ==2292133== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292133== by 0x144C59: TestImmersedBoundarySvgWriter::TestWriting() (TestImmersedBoundarySvgWriter.hpp:175) ==2292133== by 0x145618: TestDescription_TestImmersedBoundarySvgWriter_TestWriting::runTest() (TestImmersedBoundarySvgWriter.cpp:54) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== Address 0x1bc0a9f0 is 0 bytes inside a block of size 48 free'd ==2292133== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE664789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63) ==2292133== by 0xE6647C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65) ==2292133== by 0xE6DDF92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583) ==2292133== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292133== by 0x144C59: TestImmersedBoundarySvgWriter::TestWriting() (TestImmersedBoundarySvgWriter.hpp:175) ==2292133== by 0x145618: TestDescription_TestImmersedBoundarySvgWriter_TestWriting::runTest() (TestImmersedBoundarySvgWriter.cpp:54) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== Block was alloc'd at ==2292133== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292133== by 0xE6DC21F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==2292133== by 0x1448E2: TestImmersedBoundarySvgWriter::TestWriting() (TestImmersedBoundarySvgWriter.hpp:155) ==2292133== by 0x145618: TestDescription_TestImmersedBoundarySvgWriter_TestWriting::runTest() (TestImmersedBoundarySvgWriter.cpp:54) ==2292133== by 0x13B7AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292133== by 0x13EF98: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292133== by 0x13EE7D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292133== by 0x13ED23: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== { Memcheck:Free fun:_ZdlPvm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev fun:_ZN29TestImmersedBoundarySvgWriter11TestWritingEv fun:_ZN57TestDescription_TestImmersedBoundarySvgWriter_TestWriting7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2292133== ==2292133== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2292133== Open file descriptor 12: ==2292133== at 0x10CE722D: pipe (pipe.c:29) ==2292133== by 0x196A507D: ??? ==2292133== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2292133== by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292133== by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292133== by 0xF27FD38: PetscInitialize (pinit.c:924) ==2292133== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2292133== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2292133== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2292133== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2292133== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== ==2292133== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2292133== at 0x10CEBBCC: __open_nocancel (open64_nocancel.c:39) ==2292133== by 0x10C6FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2292133== by 0xF129822: ??? ==2292133== by 0xF12996F: ??? ==2292133== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292133== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292133== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292133== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2292133== by 0x105EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292133== by 0x10588D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292133== by 0xF27FD38: PetscInitialize (pinit.c:924) ==2292133== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2292133== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2292133== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2292133== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2292133== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2292133== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292133== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292133== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) ==2292133== ==2292133== Open file descriptor 116: ==2292133== ==2292133== ==2292133== Open file descriptor 112: ==2292133== ==2292133== ==2292133== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt ==2292133== ==2292133== ==2292133== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2292133== ==2292133== ==2292133== ==2292133== HEAP SUMMARY: ==2292133== in use at exit: 703,279 bytes in 9,378 blocks ==2292133== total heap usage: 55,840 allocs, 46,464 frees, 1,354,149,184 bytes allocated ==2292133== ==2292133== LEAK SUMMARY: ==2292133== definitely lost: 0 bytes in 0 blocks ==2292133== indirectly lost: 0 bytes in 0 blocks ==2292133== possibly lost: 0 bytes in 0 blocks ==2292133== still reachable: 2,576 bytes in 3 blocks ==2292133== suppressed: 700,703 bytes in 9,375 blocks ==2292133== Reachable blocks (those to which a pointer was found) are not shown. ==2292133== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2292133== ==2292133== For lists of detected and suppressed errors, rerun with: -s ==2292133== ERROR SUMMARY: 2 errors from 2 contexts (suppressed: 37 from 37)