==2292197== Memcheck, a memory error detector ==2292197== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2292197== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2292197== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info ==2292197== Parent PID: 2290032 ==2292197== ==2292197== Invalid free() / delete / delete[] / realloc() ==2292197== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292197== by 0xE6DE103: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:604) ==2292197== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292197== by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525) ==2292197== by 0x12FEF9: std::default_delete >::operator()(ImmersedBoundaryMesh<2u, 2u>*) const (unique_ptr.h:85) ==2292197== by 0x12E3F3: std::unique_ptr, std::default_delete > >::~unique_ptr() (unique_ptr.h:361) ==2292197== by 0x12BE00: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:122) ==2292197== by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30) ==2292197== by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292197== by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292197== by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292197== by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292197== by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292197== by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292197== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) ==2292197== Address 0x1bbbccd0 is 0 bytes inside a block of size 48 free'd ==2292197== at 0x484BB6F: operator delete(void*, unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292197== by 0xE664789: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:63) ==2292197== by 0xE6647C9: ImmersedBoundaryElement<2u, 2u>::~ImmersedBoundaryElement() (ImmersedBoundaryElement.cpp:65) ==2292197== by 0xE6DDF92: ImmersedBoundaryMesh<2u, 2u>::Clear() (ImmersedBoundaryMesh.cpp:583) ==2292197== by 0xE6DC979: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:524) ==2292197== by 0xE6DCA59: ImmersedBoundaryMesh<2u, 2u>::~ImmersedBoundaryMesh() (ImmersedBoundaryMesh.cpp:525) ==2292197== by 0x12FEF9: std::default_delete >::operator()(ImmersedBoundaryMesh<2u, 2u>*) const (unique_ptr.h:85) ==2292197== by 0x12E3F3: std::unique_ptr, std::default_delete > >::~unique_ptr() (unique_ptr.h:361) ==2292197== by 0x12BE00: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:122) ==2292197== by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30) ==2292197== by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292197== by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292197== by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292197== by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292197== by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292197== by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292197== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) ==2292197== Block was alloc'd at ==2292197== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2292197== by 0xE6DC21F: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:134) ==2292197== by 0x12B93F: TestShortImmersedBoundarySimulations::TestShortSingleCellSim() (TestRepresentativeImmersedBoundarySimulations.hpp:90) ==2292197== by 0x12D2F6: TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim::runTest() (TestRepresentativeImmersedBoundarySimulations.cpp:30) ==2292197== by 0x125FCA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2292197== by 0x128E68: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2292197== by 0x128D4D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2292197== by 0x128BF3: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2292197== by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292197== by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292197== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) ==2292197== { Memcheck:Free fun:_ZdlPvm fun:_ZN20ImmersedBoundaryMeshILj2ELj2EE5ClearEv fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED1Ev fun:_ZN20ImmersedBoundaryMeshILj2ELj2EED0Ev fun:_ZNKSt14default_deleteI20ImmersedBoundaryMeshILj2ELj2EEEclEPS1_ fun:_ZNSt10unique_ptrI20ImmersedBoundaryMeshILj2ELj2EESt14default_deleteIS1_EED1Ev fun:_ZN36TestShortImmersedBoundarySimulations22TestShortSingleCellSimEv fun:_ZN75TestDescription_TestShortImmersedBoundarySimulations_TestShortSingleCellSim7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2292197== ==2292197== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2292197== Open file descriptor 12: ==2292197== at 0x10CA522D: pipe (pipe.c:29) ==2292197== by 0x196A507D: ??? ==2292197== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2292197== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292197== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292197== by 0xF21DD38: PetscInitialize (pinit.c:924) ==2292197== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2292197== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2292197== by 0x12B2E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2292197== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2292197== by 0x128BBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2292197== by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292197== by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292197== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) ==2292197== ==2292197== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2292197== at 0x10CA9BCC: __open_nocancel (open64_nocancel.c:39) ==2292197== by 0x10C2DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2292197== by 0x104A7822: ??? ==2292197== by 0x104A796F: ??? ==2292197== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292197== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292197== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2292197== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2292197== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292197== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2292197== by 0xF21DD38: PetscInitialize (pinit.c:924) ==2292197== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2292197== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2292197== by 0x12B2E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2292197== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2292197== by 0x128BBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2292197== by 0x128AB5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2292197== by 0x1290C9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2292197== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) ==2292197== ==2292197== Open file descriptor 116: ==2292197== ==2292197== ==2292197== Open file descriptor 112: ==2292197== ==2292197== ==2292197== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt ==2292197== ==2292197== ==2292197== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2292197== ==2292197== ==2292197== ==2292197== HEAP SUMMARY: ==2292197== in use at exit: 700,688 bytes in 9,374 blocks ==2292197== total heap usage: 2,317,392 allocs, 2,308,032 frees, 2,116,783,552 bytes allocated ==2292197== ==2292197== LEAK SUMMARY: ==2292197== definitely lost: 0 bytes in 0 blocks ==2292197== indirectly lost: 0 bytes in 0 blocks ==2292197== possibly lost: 0 bytes in 0 blocks ==2292197== still reachable: 56 bytes in 3 blocks ==2292197== suppressed: 700,632 bytes in 9,371 blocks ==2292197== Reachable blocks (those to which a pointer was found) are not shown. ==2292197== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2292197== ==2292197== For lists of detected and suppressed errors, rerun with: -s ==2292197== ERROR SUMMARY: 14 errors from 1 contexts (suppressed: 33 from 33)