==2405340== Memcheck, a memory error detector ==2405340== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2405340== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2405340== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==2405340== Parent PID: 2403132 ==2405340== ==2405340== ==2405340== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2405340== Open file descriptor 12: ==2405340== at 0xEC4F22D: pipe (pipe.c:29) ==2405340== by 0x18A1F07D: ??? ==2405340== by 0x140224CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2405340== by 0x108EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2405340== by 0x10888D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2405340== by 0xF57FD38: PetscInitialize (pinit.c:924) ==2405340== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2405340== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2405340== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2405340== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2405340== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2405340== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2405340== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2405340== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2405340== ==2405340== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2405340== at 0xEC53BCC: __open_nocancel (open64_nocancel.c:39) ==2405340== by 0xEBD7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2405340== by 0xE4A3822: ??? ==2405340== by 0xE4A396F: ??? ==2405340== by 0x140C76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2405340== by 0x140C7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2405340== by 0x1407D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2405340== by 0x140222DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2405340== by 0x108EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2405340== by 0x10888D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2405340== by 0xF57FD38: PetscInitialize (pinit.c:924) ==2405340== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2405340== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2405340== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2405340== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2405340== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2405340== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2405340== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2405340== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==2405340== ==2405340== Open file descriptor 116: ==2405340== ==2405340== ==2405340== Open file descriptor 112: ==2405340== ==2405340== ==2405340== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==2405340== ==2405340== ==2405340== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2405340== ==2405340== ==2405340== ==2405340== HEAP SUMMARY: ==2405340== in use at exit: 700,688 bytes in 9,374 blocks ==2405340== total heap usage: 6,678,116 allocs, 6,668,742 frees, 9,011,151,800 bytes allocated ==2405340== ==2405340== LEAK SUMMARY: ==2405340== definitely lost: 0 bytes in 0 blocks ==2405340== indirectly lost: 0 bytes in 0 blocks ==2405340== possibly lost: 0 bytes in 0 blocks ==2405340== still reachable: 56 bytes in 3 blocks ==2405340== suppressed: 700,632 bytes in 9,371 blocks ==2405340== Reachable blocks (those to which a pointer was found) are not shown. ==2405340== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2405340== ==2405340== For lists of detected and suppressed errors, rerun with: -s ==2405340== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)