==2418631== Memcheck, a memory error detector ==2418631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2418631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2418631== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2418631== Parent PID: 2403132 ==2418631== ==2418631== ==2418631== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2418631== Open file descriptor 12: ==2418631== at 0xEF0522D: pipe (pipe.c:29) ==2418631== by 0x18A1F07D: ??? ==2418631== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2418631== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2418631== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2418631== by 0xF496D38: PetscInitialize (pinit.c:924) ==2418631== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2418631== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2418631== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2418631== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2418631== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2418631== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2418631== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2418631== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2418631== ==2418631== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2418631== at 0xEF09BCC: __open_nocancel (open64_nocancel.c:39) ==2418631== by 0xEE8DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2418631== by 0xE840822: ??? ==2418631== by 0xE84096F: ??? ==2418631== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2418631== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2418631== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2418631== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2418631== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2418631== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2418631== by 0xF496D38: PetscInitialize (pinit.c:924) ==2418631== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2418631== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2418631== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2418631== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2418631== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2418631== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2418631== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2418631== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2418631== ==2418631== Open file descriptor 116: ==2418631== ==2418631== ==2418631== Open file descriptor 112: ==2418631== ==2418631== ==2418631== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==2418631== ==2418631== ==2418631== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2418631== ==2418631== ==2418631== ==2418631== HEAP SUMMARY: ==2418631== in use at exit: 700,759 bytes in 9,378 blocks ==2418631== total heap usage: 2,085,932 allocs, 2,076,554 frees, 1,689,930,306 bytes allocated ==2418631== ==2418631== LEAK SUMMARY: ==2418631== definitely lost: 0 bytes in 0 blocks ==2418631== indirectly lost: 0 bytes in 0 blocks ==2418631== possibly lost: 0 bytes in 0 blocks ==2418631== still reachable: 56 bytes in 3 blocks ==2418631== suppressed: 700,703 bytes in 9,375 blocks ==2418631== Reachable blocks (those to which a pointer was found) are not shown. ==2418631== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2418631== ==2418631== For lists of detected and suppressed errors, rerun with: -s ==2418631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)