==2475001== Memcheck, a memory error detector ==2475001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2475001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2475001== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2475001== Parent PID: 2459259 ==2475001== ==2475001== ==2475001== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2475001== Open file descriptor 12: ==2475001== at 0x1055322D: pipe (pipe.c:29) ==2475001== by 0x1A6DF07D: ??? ==2475001== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2475001== by 0x121AF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2475001== by 0x12148D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2475001== by 0x10E3FD38: PetscInitialize (pinit.c:924) ==2475001== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2475001== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2475001== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2475001== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2475001== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2475001== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2475001== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2475001== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2475001== ==2475001== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2475001== at 0x10557BCC: __open_nocancel (open64_nocancel.c:39) ==2475001== by 0x104DBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2475001== by 0xFD63822: ??? ==2475001== by 0xFD6396F: ??? ==2475001== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2475001== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2475001== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2475001== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2475001== by 0x121AF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2475001== by 0x12148D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2475001== by 0x10E3FD38: PetscInitialize (pinit.c:924) ==2475001== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2475001== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2475001== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2475001== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2475001== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2475001== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2475001== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2475001== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2475001== ==2475001== Open file descriptor 116: ==2475001== ==2475001== ==2475001== Open file descriptor 112: ==2475001== ==2475001== ==2475001== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2475001== ==2475001== ==2475001== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2475001== ==2475001== ==2475001== ==2475001== HEAP SUMMARY: ==2475001== in use at exit: 700,704 bytes in 9,374 blocks ==2475001== total heap usage: 6,309,647 allocs, 6,300,273 frees, 2,072,717,538 bytes allocated ==2475001== ==2475001== LEAK SUMMARY: ==2475001== definitely lost: 0 bytes in 0 blocks ==2475001== indirectly lost: 0 bytes in 0 blocks ==2475001== possibly lost: 0 bytes in 0 blocks ==2475001== still reachable: 56 bytes in 3 blocks ==2475001== suppressed: 700,648 bytes in 9,371 blocks ==2475001== Reachable blocks (those to which a pointer was found) are not shown. ==2475001== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2475001== ==2475001== For lists of detected and suppressed errors, rerun with: -s ==2475001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)