==2517646== Memcheck, a memory error detector ==2517646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2517646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2517646== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2517646== Parent PID: 2515385 ==2517646== ==2517646== ==2517646== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2517646== Open file descriptor 12: ==2517646== at 0x1014822D: pipe (pipe.c:29) ==2517646== by 0x18A1F07D: ??? ==2517646== by 0x13F824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2517646== by 0xF969418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2517646== by 0xF902D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2517646== by 0xE5F9D38: PetscInitialize (pinit.c:924) ==2517646== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2517646== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2517646== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2517646== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2517646== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2517646== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2517646== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2517646== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==2517646== ==2517646== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2517646== at 0x1014CBCC: __open_nocancel (open64_nocancel.c:39) ==2517646== by 0x100D0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2517646== by 0xE4A3822: ??? ==2517646== by 0xE4A396F: ??? ==2517646== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2517646== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2517646== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2517646== by 0x13F822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2517646== by 0xF969418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2517646== by 0xF902D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2517646== by 0xE5F9D38: PetscInitialize (pinit.c:924) ==2517646== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2517646== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2517646== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2517646== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2517646== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2517646== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2517646== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2517646== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==2517646== ==2517646== Open file descriptor 116: ==2517646== ==2517646== ==2517646== Open file descriptor 112: ==2517646== ==2517646== ==2517646== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==2517646== ==2517646== ==2517646== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2517646== ==2517646== ==2517646== ==2517646== HEAP SUMMARY: ==2517646== in use at exit: 700,688 bytes in 9,374 blocks ==2517646== total heap usage: 9,749,287 allocs, 9,739,913 frees, 2,617,598,015 bytes allocated ==2517646== ==2517646== LEAK SUMMARY: ==2517646== definitely lost: 0 bytes in 0 blocks ==2517646== indirectly lost: 0 bytes in 0 blocks ==2517646== possibly lost: 0 bytes in 0 blocks ==2517646== still reachable: 56 bytes in 3 blocks ==2517646== suppressed: 700,632 bytes in 9,371 blocks ==2517646== Reachable blocks (those to which a pointer was found) are not shown. ==2517646== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2517646== ==2517646== For lists of detected and suppressed errors, rerun with: -s ==2517646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)