==2586923== Memcheck, a memory error detector ==2586923== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2586923== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2586923== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2586923== Parent PID: 2571451 ==2586923== ==2586923== ==2586923== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2586923== Open file descriptor 12: ==2586923== at 0x1010622D: pipe (pipe.c:29) ==2586923== by 0x18A1F07D: ??? ==2586923== by 0x13F824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2586923== by 0xF927418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2586923== by 0xF8C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2586923== by 0xE597D38: PetscInitialize (pinit.c:924) ==2586923== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2586923== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2586923== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2586923== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2586923== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2586923== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2586923== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2586923== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==2586923== ==2586923== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2586923== at 0x1010ABCC: __open_nocancel (open64_nocancel.c:39) ==2586923== by 0x1008EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2586923== by 0xF821822: ??? ==2586923== by 0xF82196F: ??? ==2586923== by 0x140276DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2586923== by 0x14027938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2586923== by 0x13FDD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2586923== by 0x13F822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2586923== by 0xF927418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2586923== by 0xF8C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2586923== by 0xE597D38: PetscInitialize (pinit.c:924) ==2586923== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2586923== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2586923== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2586923== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2586923== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2586923== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2586923== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2586923== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==2586923== ==2586923== Open file descriptor 116: ==2586923== ==2586923== ==2586923== Open file descriptor 112: ==2586923== ==2586923== ==2586923== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==2586923== ==2586923== ==2586923== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2586923== ==2586923== ==2586923== ==2586923== HEAP SUMMARY: ==2586923== in use at exit: 700,759 bytes in 9,378 blocks ==2586923== total heap usage: 1,401,108 allocs, 1,391,730 frees, 1,413,576,100 bytes allocated ==2586923== ==2586923== LEAK SUMMARY: ==2586923== definitely lost: 0 bytes in 0 blocks ==2586923== indirectly lost: 0 bytes in 0 blocks ==2586923== possibly lost: 0 bytes in 0 blocks ==2586923== still reachable: 56 bytes in 3 blocks ==2586923== suppressed: 700,703 bytes in 9,375 blocks ==2586923== Reachable blocks (those to which a pointer was found) are not shown. ==2586923== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2586923== ==2586923== For lists of detected and suppressed errors, rerun with: -s ==2586923== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)