==2629073== Memcheck, a memory error detector ==2629073== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2629073== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2629073== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2629073== Parent PID: 2627514 ==2629073== ==2629073== ==2629073== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2629073== Open file descriptor 12: ==2629073== at 0xD25222D: pipe (pipe.c:29) ==2629073== by 0x18A1E07D: ??? ==2629073== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2629073== by 0x104C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2629073== by 0x1045AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2629073== by 0xF151D38: PetscInitialize (pinit.c:924) ==2629073== by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2629073== by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2629073== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2629073== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2629073== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2629073== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2629073== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2629073== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2629073== ==2629073== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2629073== at 0xD256BCC: __open_nocancel (open64_nocancel.c:39) ==2629073== by 0xD1DAC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2629073== by 0xCE90822: ??? ==2629073== by 0xCE9096F: ??? ==2629073== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2629073== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2629073== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2629073== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2629073== by 0x104C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2629073== by 0x1045AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2629073== by 0xF151D38: PetscInitialize (pinit.c:924) ==2629073== by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2629073== by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2629073== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2629073== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2629073== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2629073== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2629073== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2629073== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2629073== ==2629073== Open file descriptor 116: ==2629073== ==2629073== ==2629073== Open file descriptor 112: ==2629073== ==2629073== ==2629073== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2629073== ==2629073== ==2629073== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2629073== ==2629073== ==2629073== ==2629073== HEAP SUMMARY: ==2629073== in use at exit: 700,727 bytes in 9,377 blocks ==2629073== total heap usage: 60,151 allocs, 50,774 frees, 1,354,339,281 bytes allocated ==2629073== ==2629073== LEAK SUMMARY: ==2629073== definitely lost: 0 bytes in 0 blocks ==2629073== indirectly lost: 0 bytes in 0 blocks ==2629073== possibly lost: 0 bytes in 0 blocks ==2629073== still reachable: 24 bytes in 2 blocks ==2629073== suppressed: 700,703 bytes in 9,375 blocks ==2629073== Reachable blocks (those to which a pointer was found) are not shown. ==2629073== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2629073== ==2629073== For lists of detected and suppressed errors, rerun with: -s ==2629073== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)