==2814699== Memcheck, a memory error detector ==2814699== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2814699== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2814699== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==2814699== Parent PID: 2796660 ==2814699== ==2814699== Warning: invalid file descriptor -1 in syscall close() ==2814699== ==2814699== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2814699== Open file descriptor 12: ==2814699== at 0xBD6D22D: pipe (pipe.c:29) ==2814699== by 0x13F9607D: ??? ==2814699== by 0xFC574CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814699== by 0xB65B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814699== by 0xB5F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814699== by 0x9F36D38: PetscInitialize (pinit.c:924) ==2814699== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814699== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814699== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2814699== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814699== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814699== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814699== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814699== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==2814699== ==2814699== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2814699== at 0xBD71BCC: __open_nocancel (open64_nocancel.c:39) ==2814699== by 0xBCF5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2814699== by 0x9DDE822: ??? ==2814699== by 0x9DDE96F: ??? ==2814699== by 0xFCFC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814699== by 0xFCFC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814699== by 0xFCB2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2814699== by 0xFC572DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2814699== by 0xB65B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814699== by 0xB5F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2814699== by 0x9F36D38: PetscInitialize (pinit.c:924) ==2814699== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2814699== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2814699== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2814699== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2814699== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2814699== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2814699== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2814699== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==2814699== ==2814699== Open file descriptor 116: ==2814699== ==2814699== ==2814699== Open file descriptor 112: ==2814699== ==2814699== ==2814699== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==2814699== ==2814699== ==2814699== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2814699== ==2814699== ==2814699== ==2814699== HEAP SUMMARY: ==2814699== in use at exit: 701,152 bytes in 9,383 blocks ==2814699== total heap usage: 6,620,307 allocs, 6,610,924 frees, 4,033,882,338 bytes allocated ==2814699== ==2814699== LEAK SUMMARY: ==2814699== definitely lost: 0 bytes in 0 blocks ==2814699== indirectly lost: 0 bytes in 0 blocks ==2814699== possibly lost: 0 bytes in 0 blocks ==2814699== still reachable: 24 bytes in 2 blocks ==2814699== suppressed: 701,128 bytes in 9,381 blocks ==2814699== Reachable blocks (those to which a pointer was found) are not shown. ==2814699== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2814699== ==2814699== For lists of detected and suppressed errors, rerun with: -s ==2814699== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 127 from 33)